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Global Metrics

Metricr0r1r2r3r4r5r6r7
Total Time (s)262.70141.0474.2840.4423.3014.2711.1514.59
Profiled Time (s)262.39140.4773.8340.0922.9213.8210.5113.54
Time in analyzed loops (%)91.387.686.483.076.870.358.745.9
Time in analyzed innermost loops (%)82.179.077.874.269.063.953.542.6
Time in user code (%)93.689.788.484.978.571.959.445.7
Compilation Options Score (%)65.765.665.464.964.865.164.062.2
Perfect Flow Complexity1.011.011.011.011.011.011.031.05
Array Access Efficiency (%)44.445.045.746.547.448.853.763.8
Perfect OpenMP + MPI + Pthread1.001.011.041.071.101.141.251.40
Perfect OpenMP + MPI + Pthread + Perfect Load Distribution1.001.041.061.111.201.331.551.85
No Scalar IntegerPotential Speedup1.041.041.041.041.041.031.031.02
Nb Loops to get 80%89991010119
FP VectorisedPotential Speedup1.051.051.061.061.061.051.061.07
Nb Loops to get 80%991011101096
Fully VectorisedPotential Speedup1.141.151.171.171.181.201.201.23
Nb Loops to get 80%1920212119171712
Only FP ArithmeticPotential Speedup1.131.131.141.151.151.151.171.19
Nb Loops to get 80%1819202020191610
Scalability - Gap1.001.071.131.231.421.742.727.11

Cumulated Speedup If No Scalar Integer

Cumulated Speedup If FP Vectorized

Cumulated Speedup If Fully Vectorized

Cumulated Speedup If Only FP Arithmetic

Scalability Speedup

Loop Based Profiles

Innermost / Single Loops

Inbetween Loops

Outermost Loops

Cumulated Coverage With All Loops

Innermost Loop Based Profiles

Coverage

Count

Application Categorization

Time

Coverage

Compilation Options

Source ObjectIssue
libgromacs.so.8
fft5d.cpp
-x(target) or -ax(target) is missing.
threaded_force_buffer.cpp
-x(target) or -ax(target) is missing.
kernel_ElecEw_VdwLJCombLB_F.cpp
-x(target) or -ax(target) is missing.
pme_gather.cpp
-x(target) or -ax(target) is missing.
calcvir.cpp
-x(target) or -ax(target) is missing.
partition.cpp
-x(target) or -ax(target) is missing.
unique_ptr.h
-x(target) or -ax(target) is missing.
kernel_ElecEw_VdwLJCombLB_VF.cpp
-x(target) or -ax(target) is missing.
kernel_prune.cpp
-x(target) or -ax(target) is missing.
pbc_simd.cpp
-x(target) or -ax(target) is missing.
listoflists.h
-x(target) or -ax(target) is missing.
vcm.cpp
-x(target) or -ax(target) is missing.
settle.cpp
-x(target) or -ax(target) is missing.
pairlist.cpp
-x(target) or -ax(target) is missing.
update.cpp
-x(target) or -ax(target) is missing.
md_support.cpp
-x(target) or -ax(target) is missing.
kernel_common.cpp
-x(target) or -ax(target) is missing.
mdatoms.cpp
-x(target) or -ax(target) is missing.
lincs.cpp
-x(target) or -ax(target) is missing.
pbc.cpp
-x(target) or -ax(target) is missing.
fft.cpp
-x(target) or -ax(target) is missing.
constr.cpp
-x(target) or -ax(target) is missing.
atomdata.cpp
-x(target) or -ax(target) is missing.
localtopology.cpp
-x(target) or -ax(target) is missing.
vector.tcc
-x(target) or -ax(target) is missing.
pme_solve.cpp
-x(target) or -ax(target) is missing.
pme_spread.cpp
-x(target) or -ax(target) is missing.
calc_verletbuf.cpp
-x(target) or -ax(target) is missing.
fft_mkl.cpp
-x(target) or -ax(target) is missing.
bonded.cpp
-x(target) or -ax(target) is missing.
pme_grid.cpp
-x(target) or -ax(target) is missing.
sim_util.cpp
-x(target) or -ax(target) is missing.
grid.cpp
-x(target) or -ax(target) is missing.
mshift.cpp
-x(target) or -ax(target) is missing.
pairs.cpp
-x(target) or -ax(target) is missing.
domdec_constraints.cpp
-x(target) or -ax(target) is missing.
manage_threading.cpp
-x(target) or -ax(target) is missing.
redistribute.cpp
-x(target) or -ax(target) is missing.
reversetopology.cpp
-x(target) or -ax(target) is missing.
gmx
-g is missing for some functions (possibly ones added by the compiler), it is needed to have more accurate reports. Other recommended flags are: -O2/-O3, -march=(target)

Path Count Profiles

Coverage

Count

Low Iteration Count Profiles

Coverage

Count

Experiment Summaries

r0r1r2r3r4r5r6r7
Application/ccc/work/cont001/ocre/oserete/gromacs-2023.1-install-icx/bin/gmxsame as r0same as r0same as r0same as r0same as r0same as r0same as r0
Timestamp2023-06-16 21:49:54same as r0same as r0same as r0same as r0same as r0same as r0same as r0
Experiment TypeSequentialOpenMP; same as r1same as r1same as r1same as r1same as r1same as r1
Machineinti6200same as r0same as r0same as r0same as r0same as r0same as r0same as r0
Architecturex86_64same as r0same as r0same as r0same as r0same as r0same as r0same as r0
Micro ArchitectureZEN_V3same as r0same as r0same as r0same as r0same as r0same as r0same as r0
Model NameAMD EPYC 7763 64-Core Processorsame as r0same as r0same as r0same as r0same as r0same as r0same as r0
Cache Size512 KBsame as r0same as r0same as r0same as r0same as r0same as r0same as r0
Number of Cores64same as r0same as r0same as r0same as r0same as r0same as r0same as r0
Maximal Frequency2.45 GHzsame as r0same as r0same as r0same as r0same as r0same as r0same as r0
OS VersionLinux 4.18.0-305.88.1.el8_4.x86_64 #1 SMP Thu Apr 6 10:22:46 EDT 2023same as r0same as r0same as r0same as r0same as r0same as r0same as r0
Architecture used during static analysisx86_64same as r0same as r0same as r0same as r0same as r0same as r0same as r0
Micro Architecture used during static analysisZEN_V3same as r0same as r0same as r0same as r0same as r0same as r0same as r0
Compilation Options
gmx:
libgromacs.so.8: clang based Intel(R) oneAPI DPC++/C++ Compiler 2023.1.0 (2023.1.0.20230320) --driver-mode=g++ --intel -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/BUILD_oneapi_23dot1_noscorep/src/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/api/legacy/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/BUILD_oneapi_23dot1_noscorep/api/legacy/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/analysisdata/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/applied_forces/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/commandline/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/compat/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/coordinateio/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/correlationfunctions/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/fft/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/gpu_utils/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/math/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/timing/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/utility/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/domdec/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/mdlib/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/pbcutil/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/pulling/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/topology/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/essentialdynamics/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/ewald/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/fileio/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/gmxana/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/gmxlib/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/gmxpreprocess/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/mdtypes/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/hardware/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/imd/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/linearalgebra/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/listed_forces/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/mdrun/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/mdrunutility/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/mdspan/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/mimic/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/modularsimulator/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/nbnxm/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/onlinehelp/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/options/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/random/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/restraint/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/selection/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/simd/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/statistics/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/swap/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/tables/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/taskassignment/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/tools/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/trajectory/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/trajectoryanalysis/include -D GMX_DOUBLE=0 -D HAVE_CONFIG_H -D TMPI_EXPORTS -D TMPI_USE_VISIBILITY -D USE_STD_INTTYPES_H -D libgromacs_EXPORTS -isystem /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/external/thread_mpi/include -isystem /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/external -isystem /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/external/tng_io/include -isystem /ccc/work/cont001/ocre/oserete/gromacs-2023.1/BUILD_oneapi_23dot1_noscorep/tng/include -isystem /ccc/products/mkl-20.0.0/system/default/20.0.0/mkl/include -isystem /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/external/muparser/include -isystem /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/external/lmfit -fno-finite-math-only -O2 -g -D NDEBUG -fPIC -mavx2 -mfma -Wno-reserved-identifier -Wno-missing-field-initializers -Wno-pass-failed -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-cast-function-type-strict -fiopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp.o -c /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp -fveclib=SVML -fheinous-gnu-extensions

libgromacs.so.8: clang based Intel(R) oneAPI DPC++/C++ Compiler 2023.1.0 (2023.1.0.20230320) --driver-mode=g++ --intel -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/BUILD_oneapi_23dot1_noscorep/src/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/api/legacy/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/BUILD_oneapi_23dot1_noscorep/api/legacy/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/analysisdata/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/applied_forces/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/commandline/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/compat/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/coordinateio/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/correlationfunctions/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/fft/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/gpu_utils/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/math/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/timing/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/utility/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/domdec/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/mdlib/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/pbcutil/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/pulling/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/topology/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/essentialdynamics/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/ewald/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/fileio/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/gmxana/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/gmxlib/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/gmxpreprocess/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/mdtypes/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/hardware/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/imd/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/linearalgebra/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/listed_forces/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/mdrun/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/mdrunutility/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/mdspan/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/mimic/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/modularsimulator/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/nbnxm/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/onlinehelp/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/options/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/random/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/restraint/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/selection/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/simd/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/statistics/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/swap/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/tables/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/taskassignment/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/tools/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/trajectory/include -I /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/trajectoryanalysis/include -D GMX_DOUBLE=0 -D HAVE_CONFIG_H -D TMPI_EXPORTS -D TMPI_USE_VISIBILITY -D USE_STD_INTTYPES_H -D libgromacs_EXPORTS -isystem /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/external/thread_mpi/include -isystem /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/external -isystem /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/external/tng_io/include -isystem /ccc/work/cont001/ocre/oserete/gromacs-2023.1/BUILD_oneapi_23dot1_noscorep/tng/include -isystem /ccc/products/mkl-20.0.0/system/default/20.0.0/mkl/include -isystem /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/external/muparser/include -isystem /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/external/lmfit -fno-finite-math-only -O2 -g -D NDEBUG -fPIC -mavx2 -mfma -Wno-reserved-identifier -Wno-missing-field-initializers -Wno-pass-failed -Weverything -Wno-c++98-compat -Wno-c++98-compat-pedantic -Wno-source-uses-openmp -Wno-c++17-extensions -Wno-documentation-unknown-command -Wno-covered-switch-default -Wno-switch-enum -Wno-extra-semi-stmt -Wno-weak-vtables -Wno-shadow -Wno-padded -Wno-reserved-id-macro -Wno-double-promotion -Wno-exit-time-destructors -Wno-global-constructors -Wno-documentation -Wno-format-nonliteral -Wno-used-but-marked-unused -Wno-float-equal -Wno-conditional-uninitialized -Wno-conversion -Wno-disabled-macro-expansion -Wno-unused-macros -Wno-unsafe-buffer-usage -Wno-cast-function-type-strict -fiopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp.o -c /ccc/work/cont001/ocre/oserete/gromacs-2023.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp -fveclib=SVML -fheinous-gnu-extensions
gmx:
same as r1same as r1same as r1same as r0same as r1same as r0
Number of processes observed1same as r0same as r0same as r0same as r0same as r0same as r0same as r0
Number of threads observed1248163264128
Frequency Driveracpi-cpufreqsame as r0same as r0same as r0same as r0same as r0same as r0same as r0
Frequency Governorperformancesame as r0same as r0same as r0same as r0same as r0same as r0same as r0
Huge Pagesalwayssame as r0same as r0same as r0same as r0same as r0same as r0same as r0
Hyperthreadingonsame as r0same as r0same as r0same as r0same as r0same as r0same as r0
Number of sockets2same as r0same as r0same as r0same as r0same as r0same as r0same as r0
Number of cores per socket64same as r0same as r0same as r0same as r0same as r0same as r0same as r0
MAQAO version2.17.4same as r0same as r0same as r0same as r0same as r0same as r0same as r0
MAQAO buildBuild information not availablesame as r0same as r0same as r0same as r0same as r0same as r0same as r0
CommentsGROMACS compiled with icx, OV1, 1 to 128 threads, run on AMD milan, 2000 stepssame as r0same as r0same as r0same as r0same as r0same as r0same as r0
×