OV - gmx_mpi - Topology

Software Topology

▼Scalability - 1x1

Number processes: 1 Number nodes: 1 Number processes per node: 1 Run Command: <executable> mdrun -s ion_channel.tpr -nsteps 10000 --resetstep 8000 -pin on -deffnm gccMPI Command: mpirun -n <number_processes> --bind-to coreRun Directory: /home/eoseret/GROMACS/DATA/GROMACS_TestCaseAOMP_NUM_THREADS: 1

ID	Observed Processes	Observed Threads	Time(s)
►Node ip-172-31-8-114+	1	1	2027.11
►Process 56436+		1	2027.11
○Thread 56436			2027.11

▶Scalability - 2x1

Number processes: 2 Number nodes: 1 Number processes per node: 2 Run Command: <executable> mdrun -s ion_channel.tpr -nsteps 10000 --resetstep 8000 -pin on -deffnm gccMPI Command: mpirun -n <number_processes> --bind-to coreRun Directory: /home/eoseret/GROMACS/DATA/GROMACS_TestCaseAOMP_NUM_THREADS: 1

ID	Observed Processes	Observed Threads	Time(s)
►Node ip-172-31-8-114+	2	2	1031.67
►Process 56585+		1	1031.07
○Thread 56585			1031.07
►Process 56652+		1	1031.67
○Thread 56652			1031.67

▶Scalability - 4x1

Number processes: 4 Number nodes: 1 Number processes per node: 4 Run Command: <executable> mdrun -s ion_channel.tpr -nsteps 10000 --resetstep 8000 -pin on -deffnm gccMPI Command: mpirun -n <number_processes> --bind-to coreRun Directory: /home/eoseret/GROMACS/DATA/GROMACS_TestCaseAOMP_NUM_THREADS: 1

ID	Observed Processes	Observed Threads	Time(s)
►Node ip-172-31-8-114+	4	4	531.72
►Process 56775+		1	531.72
○Thread 56775			531.72
►Process 56776+		1	531.25
○Thread 56776			531.25
►Process 56777+		1	531.64
○Thread 56777			531.64
►Process 56976+		1	531.67
○Thread 56976			531.67

▶Scalability - 8x1

Number processes: 8 Number nodes: 1 Number processes per node: 8 Run Command: <executable> mdrun -s ion_channel.tpr -nsteps 10000 --resetstep 8000 -pin on -deffnm gccMPI Command: mpirun -n <number_processes> --bind-to coreRun Directory: /home/eoseret/GROMACS/DATA/GROMACS_TestCaseAOMP_NUM_THREADS: 1

ID	Observed Processes	Observed Threads	Time(s)
►Node ip-172-31-8-114+	8	8	277.66
►Process 57236+		1	277.4
○Thread 57236			277.4
►Process 57237+		1	277.66
○Thread 57237			277.66
►Process 57238+		1	277.47
○Thread 57238			277.47
►Process 57239+		1	277.56
○Thread 57239			277.56
►Process 57240+		1	277.5
○Thread 57240			277.5
►Process 57241+		1	277.37
○Thread 57241			277.37
►Process 57242+		1	277.51
○Thread 57242			277.51
►Process 57278+		1	277.53
○Thread 57278			277.53

▶Scalability - 16x1

Number processes: 16 Number nodes: 1 Number processes per node: 16 Run Command: <executable> mdrun -s ion_channel.tpr -nsteps 10000 --resetstep 8000 -pin on -deffnm gccMPI Command: mpirun -n <number_processes> --bind-to coreRun Directory: /home/eoseret/GROMACS/DATA/GROMACS_TestCaseAOMP_NUM_THREADS: 1

ID	Observed Processes	Observed Threads	Time(s)
►Node ip-172-31-8-114+	16	16	148.8
►Process 57384+		1	148.61
○Thread 57384			148.61
►Process 57385+		1	148.37
○Thread 57385			148.37
►Process 57386+		1	148.5
○Thread 57386			148.5
►Process 57387+		1	148.59
○Thread 57387			148.59
►Process 57388+		1	148.54
○Thread 57388			148.54
►Process 57389+		1	148.65
○Thread 57389			148.65
►Process 57390+		1	148.38
○Thread 57390			148.38
►Process 57391+		1	148.33
○Thread 57391			148.33
►Process 57392+		1	148.67
○Thread 57392			148.67
►Process 57393+		1	148.66
○Thread 57393			148.66
►Process 57394+		1	148.4
○Thread 57394			148.4
►Process 57395+		1	148.27
○Thread 57395			148.27
►Process 57396+		1	148.23
○Thread 57396			148.23
►Process 57397+		1	148.69
○Thread 57397			148.69
►Process 57398+		1	148.28
○Thread 57398			148.28
►Process 57474+		1	148.8
○Thread 57474			148.8

▶Scalability - 32x1

Number processes: 32 Number nodes: 1 Number processes per node: 32 Run Command: <executable> mdrun -s ion_channel.tpr -nsteps 10000 --resetstep 8000 -pin on -deffnm gccMPI Command: mpirun -n <number_processes> --bind-to coreRun Directory: /home/eoseret/GROMACS/DATA/GROMACS_TestCaseAOMP_NUM_THREADS: 1

ID	Observed Processes	Observed Threads	Time(s)
►Node ip-172-31-8-114+	32	32	89.32
►Process 57642+		1	87.29
○Thread 57642			87.29
►Process 57643+		1	87.34
○Thread 57643			87.34
►Process 57644+		1	89.06
○Thread 57644			89.06
►Process 57645+		1	89.23
○Thread 57645			89.23
►Process 57646+		1	89.26
○Thread 57646			89.26
►Process 57647+		1	87.17
○Thread 57647			87.17
►Process 57648+		1	89.21
○Thread 57648			89.21
►Process 57649+		1	89.12
○Thread 57649			89.12
►Process 57650+		1	89.1
○Thread 57650			89.1
►Process 57651+		1	89.13
○Thread 57651			89.13
►Process 57652+		1	87.39
○Thread 57652			87.39
►Process 57653+		1	89.14
○Thread 57653			89.14
►Process 57654+		1	88.94
○Thread 57654			88.94
►Process 57655+		1	89
○Thread 57655			89
►Process 57656+		1	89.02
○Thread 57656			89.02
►Process 57657+		1	89.15
○Thread 57657			89.15
►Process 57658+		1	89.19
○Thread 57658			89.19
►Process 57659+		1	89.09
○Thread 57659			89.09
►Process 57750+		1	87.09
○Thread 57750			87.09
►Process 57751+		1	89.05
○Thread 57751			89.05
►Process 57753+		1	89.24
○Thread 57753			89.24
►Process 57756+		1	87.06
○Thread 57756			87.06
►Process 57758+		1	89.16
○Thread 57758			89.16
►Process 57760+		1	87.07
○Thread 57760			87.07
►Process 57762+		1	89.2
○Thread 57762			89.2
►Process 57764+		1	89.32
○Thread 57764			89.32
►Process 57765+		1	89.24
○Thread 57765			89.24
►Process 57768+		1	89.07
○Thread 57768			89.07
►Process 57769+		1	89.04
○Thread 57769			89.04
►Process 57770+		1	87.27
○Thread 57770			87.27
►Process 57773+		1	89.24
○Thread 57773			89.24
►Process 57828+		1	89.14
○Thread 57828			89.14

▶Scalability - 64x1

Number processes: 64 Number nodes: 1 Number processes per node: 64 Run Command: <executable> mdrun -s ion_channel.tpr -nsteps 10000 --resetstep 8000 -pin on -deffnm gccMPI Command: mpirun -n <number_processes> --bind-to coreRun Directory: /home/eoseret/GROMACS/DATA/GROMACS_TestCaseAOMP_NUM_THREADS: 1

ID	Observed Processes	Observed Threads	Time(s)
►Node ip-172-31-8-114+	64	64	50.05
►Process 58189+		1	48.08
○Thread 58189			48.08
►Process 58190+		1	49.98
○Thread 58190			49.98
►Process 58191+		1	47.81
○Thread 58191			47.81
►Process 58192+		1	47.73
○Thread 58192			47.73
►Process 58193+		1	49.83
○Thread 58193			49.83
►Process 58194+		1	50.01
○Thread 58194			50.01
►Process 58195+		1	49.89
○Thread 58195			49.89
►Process 58196+		1	49.92
○Thread 58196			49.92
►Process 58197+		1	49.99
○Thread 58197			49.99
►Process 58198+		1	49.82
○Thread 58198			49.82
►Process 58199+		1	49.8
○Thread 58199			49.8
►Process 58200+		1	50.04
○Thread 58200			50.04
►Process 58201+		1	49.78
○Thread 58201			49.78
►Process 58202+		1	49.74
○Thread 58202			49.74
►Process 58217+		1	48.25
○Thread 58217			48.25
►Process 58218+		1	49.84
○Thread 58218			49.84
►Process 58219+		1	49.93
○Thread 58219			49.93
►Process 58223+		1	49.81
○Thread 58223			49.81
►Process 58297+		1	49.9
○Thread 58297			49.9
►Process 58299+		1	49.88
○Thread 58299			49.88
►Process 58301+		1	48.24
○Thread 58301			48.24
►Process 58302+		1	49.9
○Thread 58302			49.9
►Process 58305+		1	49.97
○Thread 58305			49.97
►Process 58307+		1	49.91
○Thread 58307			49.91
►Process 58309+		1	48.14
○Thread 58309			48.14
►Process 58311+		1	49.82
○Thread 58311			49.82
►Process 58313+		1	49.88
○Thread 58313			49.88
►Process 58315+		1	48.3
○Thread 58315			48.3
►Process 58316+		1	49.98
○Thread 58316			49.98
►Process 58319+		1	49.81
○Thread 58319			49.81
►Process 58321+		1	49.75
○Thread 58321			49.75
►Process 58322+		1	48.1
○Thread 58322			48.1
►Process 58325+		1	49.94
○Thread 58325			49.94
►Process 58327+		1	50.01
○Thread 58327			50.01
►Process 58329+		1	49.76
○Thread 58329			49.76
►Process 58331+		1	49.8
○Thread 58331			49.8
►Process 58333+		1	48.05
○Thread 58333			48.05
►Process 58334+		1	49.97
○Thread 58334			49.97
►Process 58335+		1	49.86
○Thread 58335			49.86
►Process 58339+		1	49.95
○Thread 58339			49.95
►Process 58341+		1	48
○Thread 58341			48
►Process 58343+		1	50.04
○Thread 58343			50.04
►Process 58344+		1	49.93
○Thread 58344			49.93
►Process 58348+		1	48.21
○Thread 58348			48.21
►Process 58357+		1	49.98
○Thread 58357			49.98
►Process 58358+		1	49.86
○Thread 58358			49.86
►Process 58360+		1	50.01
○Thread 58360			50.01
►Process 58363+		1	49.87
○Thread 58363			49.87
►Process 58371+		1	49.91
○Thread 58371			49.91
►Process 58383+		1	48.05
○Thread 58383			48.05
►Process 58384+		1	49.96
○Thread 58384			49.96
►Process 58392+		1	49.96
○Thread 58392			49.96
►Process 58398+		1	47.85
○Thread 58398			47.85
►Process 58403+		1	49.79
○Thread 58403			49.79
►Process 58407+		1	50.05
○Thread 58407			50.05
►Process 58408+		1	49.95
○Thread 58408			49.95
►Process 58417+		1	47.99
○Thread 58417			47.99
►Process 58419+		1	49.91
○Thread 58419			49.91
►Process 58433+		1	49.95
○Thread 58433			49.95
►Process 58434+		1	50.02
○Thread 58434			50.02
►Process 58453+		1	47.93
○Thread 58453			47.93
►Process 58454+		1	48.06
○Thread 58454			48.06
►Process 58529+		1	50
○Thread 58529			50
►Process 58567+		1	49.92
○Thread 58567			49.92

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