Loop id | Source Location | Source Function | Level | Coverage 1x52 (%) | Max Time Over Threads 1x52 (s) | Time w.r.t. Wall Time 1x52 (s) | Nb Threads 1x52 | GFLOPS 1x52 | Vectorization Ratio (%) | Vector Length Use (%) | Speedup If No Scalar Integer | Speedup If FP Vectorized | Speedup If Fully Vectorized | Speedup If Perfect Load Balancing 1x52 | Stride 0 | Stride 1 | Stride n | Stride Unknown | Stride Indirect |
---|
2243 | libgromacs_mpi.so.7 - kernel_outer.h:547-547 [...] | nbnxm_kernel_ElecEw_VdwLJCombLB_F_2xmm(NbnxnPairlistCpu const*, nbnxn_atomdata_t const*, interaction_const_t const*, float const (*) [3], nbnxn_atomdata_output_t*) | Innermost | 14.52 | 12.57 | 10.04 | 52 | 2404.30 | 93.13 | 86.74 | 1 | 1 | 1.01 | 1.3 | 2 | 0 | 1 | 3 | 2 |
2247 | libgromacs_mpi.so.7 - kernel_outer.h:565-565 [...] | nbnxm_kernel_ElecEw_VdwLJCombLB_F_2xmm(NbnxnPairlistCpu const*, nbnxn_atomdata_t const*, interaction_const_t const*, float const (*) [3], nbnxn_atomdata_output_t*) | Innermost | 5.25 | 8.88 | 3.63 | 52 | 2589.69 | 93.57 | 87.59 | 1 | 1 | 1.01 | 2.53 | 2 | 0 | 1 | 3 | 2 |
15683 | libgromacs_mpi.so.7 - pme_gather.cpp:81-348 [...] | gather_f_bsplines(gmx_pme_t const*, float const*, bool, PmeAtomComm const*, splinedata_t const*, float) | Outermost | 4.97 | 5.33 | 3.44 | 52 | 345.56 | 56.11 | 44.55 | 1.6 | 1.05 | 1.26 | 1.61 | NA | NA | NA | NA | NA |
15932 | libgromacs_mpi.so.7 - fft5d.cpp:884-886 | fft5d_execute(fft5d_plan_t*, int, gmx_wallcycle*) | Innermost | 3.88 | 4.54 | 2.69 | 52 | 0.00 | 0 | 12.5 | 1 | 1 | 8 | 1.75 | 0 | 0 | 0 | 2 | 0 |
15851 | libgromacs_mpi.so.7 - pme_spread.cpp:635-641 | spread_on_grid(gmx_pme_t const*, PmeAtomComm*, pmegrids_t const*, bool, bool, float*, bool, int) [clone ._omp_fn.2] | InBetween | 3.38 | 2.93 | 2.34 | 52 | 2.00 | 0 | 6.73 | 1.6 | 1.81 | 15.52 | 1.3 | NA | NA | NA | NA | NA |
2250 | libgromacs_mpi.so.7 - kernel_outer.h:547-547 [...] | nbnxm_kernel_ElecEw_VdwLJCombLB_VF_2xmm(NbnxnPairlistCpu const*, nbnxn_atomdata_t const*, interaction_const_t const*, float const (*) [3], nbnxn_atomdata_output_t*) | Innermost | 2.14 | 1.93 | 1.48 | 52 | 2759.95 | 92.5 | 88.5 | 1 | 1 | 1.01 | 1.35 | 2 | 0 | 1 | 2 | 3 |
15862 | libgromacs_mpi.so.7 - pme_spread.cpp:358-400 [...] | spread_on_grid(gmx_pme_t const*, PmeAtomComm*, pmegrids_t const*, bool, bool, float*, bool, int) [clone ._omp_fn.1] | InBetween | 1.6 | 1.52 | 1.11 | 52 | 174.91 | 59.26 | 19.72 | 1.66 | 2.4 | 9.6 | 1.42 | NA | NA | NA | NA | NA |
2921 | libgromacs_mpi.so.7 - kernel_common.cpp:56-74 [...] | clearForceBuffer(nbnxn_atomdata_t*, int) | Single | 1.28 | 1.28 | 0.89 | 52 | 0.00 | 54.55 | 60.23 | 1 | 1 | 1 | 1.49 | NA | NA | NA | NA | NA |
15867 | libgromacs_mpi.so.7 - pme_spread.cpp:277-292 [...] | spread_on_grid(gmx_pme_t const*, PmeAtomComm*, pmegrids_t const*, bool, bool, float*, bool, int) [clone ._omp_fn.1] | InBetween | 1.18 | 1.27 | 0.81 | 52 | 131.63 | 17.16 | 9.44 | 1.52 | 2.83 | 17 | 1.61 | NA | NA | NA | NA | NA |
15717 | libgromacs_mpi.so.7 - pme_grid.cpp:402-404 | copy_fftgrid_to_pmegrid(gmx_pme_t*, float const*, float*, int, int, int) | Innermost | 1.15 | 0.99 | 0.8 | 52 | 0.00 | 0 | 6.25 | 1 | 1 | 16 | 1.29 | 0 | 2 | 0 | 0 | 0 |
13986 | libgromacs_mpi.so.7 - lincs.cpp:276-287 | gmx::lincs_matrix_expand(gmx::Lincs const&, gmx::Task const&, gmx::ArrayRef<float const>, gmx::ArrayRef<float>, gmx::ArrayRef<float>, gmx::ArrayRef<float>) [clone .isra.0] | InBetween | 1.11 | 1.05 | 0.77 | 52 | 32.75 | 6.25 | 7.42 | 1.46 | 2.05 | 16 | 1.42 | NA | NA | NA | NA | NA |
15861 | libgromacs_mpi.so.7 - pme_spread.cpp:445-447 | spread_on_grid(gmx_pme_t const*, PmeAtomComm*, pmegrids_t const*, bool, bool, float*, bool, int) [clone ._omp_fn.1] | Innermost | 0.85 | 0.95 | 0.59 | 52 | 0.00 | 0 | 6.25 | 1 | 1 | 16 | 1.67 | 0 | 0 | 4 | 0 | 0 |
2726 | libgromacs_mpi.so.7 - kernel_prune.cpp:109-163 [...] | nbnxn_kernel_prune_2xnn(NbnxnPairlistCpu*, nbnxn_atomdata_t const*, gmx::ArrayRef<gmx::BasicVector<float> const>, float) | Innermost | 0.83 | 0.67 | 0.58 | 52 | 964.69 | 91.93 | 84.66 | 1.15 | 1 | 1 | 1.2 | 0.25 | 0 | 0 | 3 | 1.75 |
2254 | libgromacs_mpi.so.7 - kernel_outer.h:565-565 [...] | nbnxm_kernel_ElecEw_VdwLJCombLB_VF_2xmm(NbnxnPairlistCpu const*, nbnxn_atomdata_t const*, interaction_const_t const*, float const (*) [3], nbnxn_atomdata_output_t*) | Innermost | 0.82 | 1.42 | 0.57 | 52 | 2900.22 | 92.31 | 88.74 | 1 | 1 | 1.01 | 2.58 | 2 | 0 | 1 | 2 | 3 |
13977 | libgromacs_mpi.so.7 - lincs.cpp:417-432 [...] | gmx::lincs_update_atoms_ind(gmx::ArrayRef<int const>, gmx::ArrayRef<gmx::AtomPair const>, float, gmx::ArrayRef<float const>, gmx::ArrayRef<gmx::BasicVector<float> const>, gmx::ArrayRef<float const>, float (*) [3]) [clone... | Single | 0.8 | 1.01 | 0.55 | 52 | 62.55 | 42.11 | 11.84 | 1.28 | 1.74 | 11.13 | 1.91 | 0 | 1 | 0 | 6 | 0 |
14221 | libgromacs_mpi.so.7 - settle.cpp:423-431 [...] | void gmx::settleTemplate<gmx::SimdFloat, gmx::SimdFBool, 16, float const*, true, false>(gmx::SettleData const&, int, int, float const*, float const*, float*, float, float*, float (*) [3], bool*) [clone .constprop.0] | Single | 0.79 | 0.82 | 0.55 | 52 | 207.71 | 100 | 100 | 1.01 | 1 | 1 | 1.55 | 3 | 0 | 0 | 3 | 40 |
2244 | libgromacs_mpi.so.7 - avx512fintrin.h:371-15343 [...] | nbnxm_kernel_ElecEw_VdwLJCombLB_F_2xmm(NbnxnPairlistCpu const*, nbnxn_atomdata_t const*, interaction_const_t const*, float const (*) [3], nbnxn_atomdata_output_t*) | Innermost | 0.7 | 0.71 | 0.49 | 52 | 1788.57 | 90.14 | 84.19 | 1.01 | 1 | 1.01 | 1.51 | 3 | 1 | 3 | 2 | 1 |
15931 | libgromacs_mpi.so.7 - fft5d.cpp:880-886 | fft5d_execute(fft5d_plan_t*, int, gmx_wallcycle*) | InBetween | 0.67 | 0.86 | 0.46 | 52 | 0.00 | 0 | 8.87 | 1 | 1 | 13.26 | 1.91 | NA | NA | NA | NA | NA |
2733 | libgromacs_mpi.so.7 - atomdata.cpp:1119-1122 [...] | nbnxn_atomdata_add_nbat_f_to_f_reduce(nbnxn_atomdata_t*, int) [clone ._omp_fn.0] | InBetween | 0.63 | 0.73 | 0.44 | 50 | 23.27 | 52.94 | 58.46 | 2.19 | 1 | 1.16 | 1.66 | NA | NA | NA | NA | NA |
15882 | libgromacs_mpi.so.7 - pme_spread.cpp:104-145 [...] | spread_on_grid(gmx_pme_t const*, PmeAtomComm*, pmegrids_t const*, bool, bool, float*, bool, int) [clone ._omp_fn.0] | Innermost | 0.61 | 0.58 | 0.42 | 52 | 66.74 | 2.72 | 7.41 | 1.04 | 2.16 | 16 | 1.41 | 1 | 3.5 | 0.5 | 0 | 6.5 |
2248 | libgromacs_mpi.so.7 - avx512fintrin.h:371-15343 [...] | nbnxm_kernel_ElecEw_VdwLJCombLB_F_2xmm(NbnxnPairlistCpu const*, nbnxn_atomdata_t const*, interaction_const_t const*, float const (*) [3], nbnxn_atomdata_output_t*) | Innermost | 0.54 | 0.93 | 0.37 | 52 | 2209.52 | 90.76 | 84.72 | 1.01 | 1 | 1.01 | 2.58 | 3 | 1 | 3 | 2 | 1 |
2242 | libgromacs_mpi.so.7 - kernel_outer.h:333-595 [...] | nbnxm_kernel_ElecEw_VdwLJCombLB_F_2xmm(NbnxnPairlistCpu const*, nbnxn_atomdata_t const*, interaction_const_t const*, float const (*) [3], nbnxn_atomdata_output_t*) | Outermost | 0.51 | 0.63 | 0.35 | 52 | 790.12 | 70.27 | 59.49 | 1.47 | 1.02 | 1.33 | 1.85 | NA | NA | NA | NA | NA |
15815 | libgromacs_mpi.so.7 - pme_solve.cpp:534-543 | solve_pme_yzx(gmx_pme_t const*, t_complex*, float, bool, int, int) | Innermost | 0.5 | 0.46 | 0.35 | 52 | 116.83 | 6.67 | 7.5 | 1.02 | 3.06 | 16 | 1.39 | 1 | 0 | 8 | 0 | 0 |
5091 | libgromacs_mpi.so.7 - threaded_force_buffer.cpp:207-211 [...] | void gmx::(anonymous namespace)::reduceThreadForceBuffers<float [4]>(gmx::ArrayRef<gmx::BasicVector<float> >, gmx::ArrayRef<std::unique_ptr<gmx::ThreadForceBuffer<float [4]>, std::default_delete<gmx::ThreadForceBuffer<fl... | InBetween | 0.49 | 0.51 | 0.34 | 52 | 31.35 | 31.82 | 12.36 | 1.48 | 1.48 | 10.58 | 1.55 | NA | NA | NA | NA | NA |
2246 | libgromacs_mpi.so.7 - kernel_outer.h:581-581 [...] | nbnxm_kernel_ElecEw_VdwLJCombLB_F_2xmm(NbnxnPairlistCpu const*, nbnxn_atomdata_t const*, interaction_const_t const*, float const (*) [3], nbnxn_atomdata_output_t*) | Innermost | 0.46 | 0.57 | 0.32 | 50 | 1905.50 | 98.73 | 88.13 | 1 | 1 | 1.01 | 1.78 | 2 | 0 | 1 | 1 | 2 |
15928 | libgromacs_mpi.so.7 - fft5d.cpp:947-949 | fft5d_execute(fft5d_plan_t*, int, gmx_wallcycle*) | Innermost | 0.44 | 0.44 | 0.3 | 52 | 0.00 | 0 | 12.5 | 1 | 1 | 8 | 1.52 | 0 | 1 | 0 | 1 | 0 |
15438 | libgromacs_mpi.so.7 - bonded.cpp:1151-1177 [...] | std::enable_if<((BondedKernelFlavor)0)==((BondedKernelFlavor)0), float>::type (anonymous namespace)::angles<(BondedKernelFlavor)0>(int, int const*, t_iparams const*, float const (*) [3], float (*) [4], float (*) [3], t_pbc const*, float, float*... | Outermost | 0.44 | 0.6 | 0.31 | 52 | 306.58 | 76.77 | 48.98 | 1.03 | 1 | 1.34 | 2 | NA | NA | NA | NA | NA |
15816 | libgromacs_mpi.so.7 - pme_solve.cpp:522-531 | solve_pme_yzx(gmx_pme_t const*, t_complex*, float, bool, int, int) | Innermost | 0.43 | 0.37 | 0.3 | 52 | 119.97 | 6.67 | 7.5 | 1.02 | 3.06 | 16 | 1.28 | 1 | 0 | 6 | 0 | 0 |
14337 | libgromacs_mpi.so.7 - avx512fintrin.h:457-13377 [...] | gmx::Update::Impl::update_coords(t_inputrec const&, long, int, bool, gmx::ArrayRef<ParticleType const>, gmx::ArrayRef<float const>, gmx::ArrayRef<float const [3]>, t_state*, gmx::ArrayRefWithPadding<gmx::BasicVector<float> co... | Innermost | 0.42 | 0.37 | 0.29 | 52 | 75.59 | 100 | 100 | 1.03 | 1 | 1 | 1.32 | 0 | 4 | 1 | 0 | 0 |
5110 | libgromacs_mpi.so.7 - threaded_force_buffer.cpp:78-81 [...] | gmx::ThreadForceBuffer<float [4]>::clearForcesAndEnergies() | Single | 0.39 | 0.65 | 0.27 | 52 | 0.00 | 0 | 6.25 | 1 | 1 | 16 | 2.5 | NA | NA | NA | NA | NA |
15860 | libgromacs_mpi.so.7 - pme_spread.cpp:441-447 | spread_on_grid(gmx_pme_t const*, PmeAtomComm*, pmegrids_t const*, bool, bool, float*, bool, int) [clone ._omp_fn.1] | InBetween | 0.38 | 0.44 | 0.27 | 52 | 0.00 | 0 | 8.5 | 1.68 | 1 | 13.47 | 1.69 | NA | NA | NA | NA | NA |
2735 | libgromacs_mpi.so.7 - atomdata.cpp:1207-1211 [...] | nbnxn_atomdata_add_nbat_f_to_f_reduce(nbnxn_atomdata_t*, int) [clone ._omp_fn.0] | Innermost | 0.36 | 0.34 | 0.25 | 52 | 19.20 | 25 | 13.67 | 3.65 | 1 | 10.33 | 1.42 | NA | NA | NA | NA | NA |
15813 | libgromacs_mpi.so.7 - pme_solve.cpp:555-561 | solve_pme_yzx(gmx_pme_t const*, t_complex*, float, bool, int, int) | Innermost | 0.33 | 0.27 | 0.23 | 52 | 112.91 | 0 | 6.25 | 1 | 1 | 16 | 1.23 | 0 | 1 | 1 | 0 | 0 |
14311 | libgromacs_mpi.so.7 - update.cpp:1641-1641 | gmx::Update::Impl::finish_update(t_inputrec const&, bool, int, gmx::ArrayRef<unsigned short const>, t_state*, gmx_wallcycle*, bool) [clone ._omp_fn.0] | Single | 0.32 | 0.32 | 0.22 | 52 | 0.00 | 0 | 9.38 | 1 | 1 | 10.67 | 1.45 | 0 | 0 | 2 | 0 | 0 |
2734 | libgromacs_mpi.so.7 - atomdata.cpp:1122-1122 [...] | nbnxn_atomdata_add_nbat_f_to_f_reduce(nbnxn_atomdata_t*, int) [clone ._omp_fn.0] | Innermost | 0.31 | 0.49 | 0.21 | 48 | 28.95 | 100 | 100 | 1 | 1 | 1 | 2.23 | 0 | 1 | 0 | 0 | 3 |
3678 | libgromacs_mpi.so.7 - pairlist_simd_2xmm.h:130-176 [...] | makeClusterListSimd2xnn(Nbnxm::Grid const&, NbnxnPairlistCpu*, int, int, int, bool, float const*, float, float, int*) | Single | 0.31 | 0.3 | 0.21 | 52 | 185.19 | 80.26 | 41.49 | 1.34 | 1.19 | 1.71 | 1.43 | 3.5 | 0 | 0.5 | 1 | 0 |
14002 | libgromacs_mpi.so.7 - lincs.cpp:798-809 [...] | gmx::do_lincs(gmx::ArrayRefWithPadding<gmx::BasicVector<float> const>, gmx::ArrayRefWithPadding<gmx::BasicVector<float> >, float const (*) [3], t_pbc*, gmx::Lincs*, int, gmx::ArrayRef<float const>, t_commrec const*, bool, floa... | Single | 0.3 | 0.36 | 0.21 | 52 | 136.38 | 100 | 100 | 1 | 1 | 1 | 1.8 | 1 | 5 | 1 | 0 | 12 |
2745 | libgromacs_mpi.so.7 - atomdata.cpp:226-236 | copy_rvec_to_nbat_real(int const*, int, int, float const (*) [3], int, float*, int) | Single | 0.27 | 0.45 | 0.18 | 36 | 0.00 | 0 | 6.66 | 1.49 | 1 | 15.57 | 1.73 | 0 | 0 | 0 | 7 | 0 |
3743 | libgromacs_mpi.so.7 - pairlist.cpp:2922-3472 [...] | PairlistSet::constructPairlists(gmx::InteractionLocality, Nbnxm::GridSet const&, gmx::ArrayRef<PairsearchWork>, nbnxn_atomdata_t*, gmx::ListOfLists<int> const&, int, t_nrnb*, SearchCycleCounting*) [clone ._omp_fn.0] | InBetween | 0.25 | 0.23 | 0.17 | 52 | 21.41 | 5.91 | 7.93 | 1.71 | 2.31 | 22.39 | 1.35 | NA | NA | NA | NA | NA |
14003 | libgromacs_mpi.so.7 - lincs.cpp:1085-1089 [...] | gmx::do_lincs(gmx::ArrayRefWithPadding<gmx::BasicVector<float> const>, gmx::ArrayRefWithPadding<gmx::BasicVector<float> >, float const (*) [3], t_pbc*, gmx::Lincs*, int, gmx::ArrayRef<float const>, t_commrec const*, bool, floa... | Outermost | 0.22 | 0.22 | 0.15 | 52 | 48.47 | 0 | 6.25 | 1.11 | 1.25 | 16 | 1.47 | NA | NA | NA | NA | NA |
15433 | libgromacs_mpi.so.7 - bonded.cpp:2022-2124 [...] | std::enable_if<((BondedKernelFlavor)0)==((BondedKernelFlavor)0), float>::type (anonymous namespace)::pdihs<(BondedKernelFlavor)0>(int, int const*, t_iparams const*, float const (*) [3], float (*) [4], float (*) [3], t_pbc const*, float, float*,... | Outermost | 0.21 | 0.22 | 0.14 | 52 | 713.43 | 71.04 | 32.97 | 1.08 | 1.07 | 1.94 | 1.57 | 2 | 0 | 0 | 16 | 0 |
15583 | libgromacs_mpi.so.7 - pairs.cpp:863-893 [...] | do_pairs(int, int, int const*, t_iparams const*, float const (*) [3], float (*) [4], float (*) [3], t_pbc const*, float const*, float*, gmx::ArrayRef<float>, gmx::ArrayRef<float>, gmx::ArrayRef<bool>, gmx::ArrayRef<unsigned short>, ... | Outermost | 0.2 | 0.2 | 0.14 | 52 | 265.43 | 67.31 | 35.82 | 1.29 | 1.05 | 1.45 | 1.54 | NA | NA | NA | NA | NA |
15808 | libgromacs_mpi.so.7 - pme_solve.cpp:499-511 | solve_pme_yzx(gmx_pme_t const*, t_complex*, float, bool, int, int) | Innermost | 0.18 | 0.17 | 0.13 | 52 | 135.77 | 32.81 | 11.13 | 1.02 | 1.26 | 8.63 | 1.42 | 1 | 3 | 6 | 0 | 0 |
15852 | libgromacs_mpi.so.7 - pme_spread.cpp:639-641 | spread_on_grid(gmx_pme_t const*, PmeAtomComm*, pmegrids_t const*, bool, bool, float*, bool, int) [clone ._omp_fn.2] | Innermost | 0.17 | 0.26 | 0.12 | 52 | 4.67 | 0 | 6.25 | 1.24 | 1.28 | 16 | 2.36 | 0 | 0 | 6 | 0 | 0 |
15884 | libgromacs_mpi.so.7 - pme_spread.cpp:172-174 | spread_on_grid(gmx_pme_t const*, PmeAtomComm*, pmegrids_t const*, bool, bool, float*, bool, int) [clone ._omp_fn.0] | Innermost | 0.17 | 0.15 | 0.11 | 52 | 0.00 | 0 | 6.25 | 1 | 1 | 16 | 1.36 | 0 | 1 | 1 | 4 | 2 |
2754 | libgromacs_mpi.so.7 - atomdata.cpp:1173-1179 [...] | reduceForces(nbnxn_atomdata_t*, gmx::AtomLocality, Nbnxm::GridSet const&, float (*) [3]) [clone ._omp_fn.0] | Innermost | 0.13 | 0.15 | 0.09 | 52 | 49.00 | 0 | 6.25 | 1.52 | 1.69 | 16 | 1.67 | 0 | 2 | 0 | 2 | 0 |
15814 | libgromacs_mpi.so.7 - pme_solve.cpp:234-234 [...] | solve_pme_yzx(gmx_pme_t const*, t_complex*, float, bool, int, int) | Innermost | 0.13 | 0.14 | 0.09 | 52 | 1337.67 | 100 | 100 | 1 | 1 | 1 | 1.56 | 0 | 2 | 1 | 0 | 0 |
15698 | libgromacs_mpi.so.7 - pme_grid.cpp:535-539 | unwrap_periodic_pmegrid(gmx_pme_t*, float*) [clone ._omp_fn.1] | InBetween | 0.13 | 0.15 | 0.09 | 52 | 0.00 | 0 | 8.33 | 1.86 | 1 | 14.13 | 1.88 | NA | NA | NA | NA | NA |
3745 | libgromacs_mpi.so.7 - pairlist.cpp:3408-3409 | PairlistSet::constructPairlists(gmx::InteractionLocality, Nbnxm::GridSet const&, gmx::ArrayRef<PairsearchWork>, nbnxn_atomdata_t*, gmx::ListOfLists<int> const&, int, t_nrnb*, SearchCycleCounting*) [clone ._omp_fn.0] | Innermost | 0.13 | 0.15 | 0.09 | 52 | 7.33 | 0 | 6.25 | 1.11 | 1.14 | 16 | 1.67 | NA | NA | NA | NA | NA |
15857 | libgromacs_mpi.so.7 - pme_spread.cpp:188-199 [...] | spread_on_grid(gmx_pme_t const*, PmeAtomComm*, pmegrids_t const*, bool, bool, float*, bool, int) [clone ._omp_fn.1] | InBetween | 0.13 | 0.15 | 0.09 | 52 | 0.00 | 0 | 8.44 | 1 | 1 | 14.42 | 1.67 | NA | NA | NA | NA | NA |
14001 | libgromacs_mpi.so.7 - lincs.cpp:919-930 [...] | gmx::do_lincs(gmx::ArrayRefWithPadding<gmx::BasicVector<float> const>, gmx::ArrayRefWithPadding<gmx::BasicVector<float> >, float const (*) [3], t_pbc*, gmx::Lincs*, int, gmx::ArrayRef<float const>, t_commrec const*, bool, floa... | Innermost | 0.13 | 0.17 | 0.09 | 52 | 181.33 | 100 | 100 | 1 | 1 | 1 | 1.89 | 1 | 4 | 1 | 0 | 6 |
15807 | libgromacs_mpi.so.7 - pme_solve.cpp:234-561 [...] | solve_pme_yzx(gmx_pme_t const*, t_complex*, float, bool, int, int) | Outermost | 0.13 | 0.17 | 0.09 | 52 | 86.56 | 18.2 | 18.62 | 1.44 | 1.27 | 1.98 | 1.89 | NA | NA | NA | NA | NA |
15434 | libgromacs_mpi.so.7 - bonded.cpp:2072-2095 | std::enable_if<((BondedKernelFlavor)0)==((BondedKernelFlavor)0), float>::type (anonymous namespace)::pdihs<(BondedKernelFlavor)0>(int, int const*, t_iparams const*, float const (*) [3], float (*) [4], float (*) [3], t_pbc const*, float, float*,... | Innermost | 0.11 | 0.11 | 0.08 | 52 | 27.00 | 4.9 | 7.17 | 3.36 | 1 | 16 | 1.38 | 1 | 0 | 0 | 10.5 | 0 |
2251 | libgromacs_mpi.so.7 - avx512fintrin.h:371-15343 [...] | nbnxm_kernel_ElecEw_VdwLJCombLB_VF_2xmm(NbnxnPairlistCpu const*, nbnxn_atomdata_t const*, interaction_const_t const*, float const (*) [3], nbnxn_atomdata_output_t*) | Innermost | 0.1 | 0.1 | 0.07 | 52 | 2063.43 | 89.12 | 85.83 | 1.01 | 1 | 1.01 | 1.43 | 3 | 1 | 3 | 2 | 1 |
15584 | libgromacs_mpi.so.7 - pairs.cpp:869-893 [...] | do_pairs(int, int, int const*, t_iparams const*, float const (*) [3], float (*) [4], float (*) [3], t_pbc const*, float const*, float*, gmx::ArrayRef<float>, gmx::ArrayRef<float>, gmx::ArrayRef<bool>, gmx::ArrayRef<unsigned short>, ... | Innermost | 0.1 | 0.11 | 0.07 | 52 | 37.57 | 5.9 | 7.55 | 2 | 1.19 | 16 | 1.83 | 1 | 0 | 0 | 9 | 0.75 |
15858 | libgromacs_mpi.so.7 - pme_spread.cpp:197-199 | spread_on_grid(gmx_pme_t const*, PmeAtomComm*, pmegrids_t const*, bool, bool, float*, bool, int) [clone ._omp_fn.1] | Innermost | 0.09 | 0.12 | 0.06 | 52 | 0.00 | 0 | 6.25 | 1 | 1 | 16 | 2 | 0 | 2 | 0 | 0 | 0 |
3680 | libgromacs_mpi.so.7 - pairlist_simd_2xmm.h:185-231 [...] | makeClusterListSimd2xnn(Nbnxm::Grid const&, NbnxnPairlistCpu*, int, int, int, bool, float const*, float, float, int*) | Single | 0.09 | 0.1 | 0.06 | 52 | 315.33 | 79.14 | 41.81 | 1.33 | 1.19 | 1.68 | 1.67 | 3.5 | 0 | 0.5 | 1 | 0 |
14222 | libgromacs_mpi.so.7 - settle.cpp:423-674 [...] | void gmx::settleTemplate<gmx::SimdFloat, gmx::SimdFBool, 16, float const*, true, true>(gmx::SettleData const&, int, int, float const*, float const*, float*, float, float*, float (*) [3], bool*) | Single | 0.09 | 0.1 | 0.06 | 52 | 274.67 | 99.8 | 99.82 | 1.01 | 1 | 1 | 1.67 | 4 | 1 | 0 | 36 | 0 |
5087 | libgromacs_mpi.so.7 - threaded_force_buffer.cpp:182-186 [...] | void gmx::(anonymous namespace)::reduceThreadForceBuffers<float [4]>(gmx::ArrayRef<gmx::BasicVector<float> >, gmx::ArrayRef<std::unique_ptr<gmx::ThreadForceBuffer<float [4]>, std::default_delete<gmx::ThreadForceBuffer<fl... | Innermost | 0.08 | 0.09 | 0.05 | 52 | 12.80 | 33.33 | 14.58 | 3 | 1 | 9.5 | 1.8 | NA | NA | NA | NA | NA |
2255 | libgromacs_mpi.so.7 - avx512fintrin.h:371-15343 [...] | nbnxm_kernel_ElecEw_VdwLJCombLB_VF_2xmm(NbnxnPairlistCpu const*, nbnxn_atomdata_t const*, interaction_const_t const*, float const (*) [3], nbnxn_atomdata_output_t*) | Innermost | 0.08 | 0.14 | 0.06 | 52 | 2476.00 | 89.45 | 86.54 | 1.01 | 1 | 1.01 | 2.8 | 3 | 1 | 3 | 2 | 1 |
3679 | libgromacs_mpi.so.7 - pairlist_simd_2xmm.h:237-243 [...] | makeClusterListSimd2xnn(Nbnxm::Grid const&, NbnxnPairlistCpu*, int, int, int, bool, float const*, float, float, int*) | Single | 0.08 | 0.09 | 0.05 | 52 | 6.40 | 0 | 7.6 | 1 | 1 | 14.27 | 1.8 | NA | NA | NA | NA | NA |
15439 | libgromacs_mpi.so.7 - bonded.cpp:1157-1177 | std::enable_if<((BondedKernelFlavor)0)==((BondedKernelFlavor)0), float>::type (anonymous namespace)::angles<(BondedKernelFlavor)0>(int, int const*, t_iparams const*, float const (*) [3], float (*) [4], float (*) [3], t_pbc const*, float, float*... | Innermost | 0.08 | 0.11 | 0.06 | 52 | 23.33 | 8.89 | 8.06 | 2.82 | 1 | 15.86 | 1.83 | NA | NA | NA | NA | NA |
15461 | libgromacs_mpi.so.7 - bonded.cpp:444-1084 [...] | std::enable_if<(((BondedKernelFlavor)2)!=((BondedKernelFlavor)0))||(!(1)), float>::type (anonymous namespace)::angles<(BondedKernelFlavor)2>(int, int const*, t_iparams const*, float const (*) [3], float (*) [4], float (*) [3], t_pbc const*, flo... | Single | 0.08 | 0.09 | 0.06 | 52 | 111.67 | 10.42 | 8.78 | 1.09 | 2.36 | 11.67 | 1.8 | 2 | 1 | 0 | 4.5 | 0 |
2249 | libgromacs_mpi.so.7 - kernel_outer.h:333-603 [...] | nbnxm_kernel_ElecEw_VdwLJCombLB_VF_2xmm(NbnxnPairlistCpu const*, nbnxn_atomdata_t const*, interaction_const_t const*, float const (*) [3], nbnxn_atomdata_output_t*) | Outermost | 0.08 | 0.09 | 0.05 | 52 | 927.60 | 65.06 | 56.25 | 1.32 | 1.04 | 1.39 | 1.8 | NA | NA | NA | NA | NA |
14252 | libgromacs_mpi.so.7 - vec.h:292-294 | clearRVecs(gmx::ArrayRef<gmx::BasicVector<float> >, bool) [clone ._omp_fn.0] | Single | 0.07 | 0.1 | 0.05 | 52 | 0.00 | 0 | 6.25 | 1 | 1 | 16 | 2 | 0 | 0 | 1 | 0 | 0 |
3738 | libgromacs_mpi.so.7 - pairlist.cpp:607-1420 [...] | PairlistSet::constructPairlists(gmx::InteractionLocality, Nbnxm::GridSet const&, gmx::ArrayRef<PairsearchWork>, nbnxn_atomdata_t*, gmx::ListOfLists<int> const&, int, t_nrnb*, SearchCycleCounting*) [clone ._omp_fn.0] | InBetween | 0.07 | 0.11 | 0.05 | 52 | 0.00 | 0 | 7.39 | 1 | 1 | 14.98 | 2.2 | NA | NA | NA | NA | NA |
14066 | libgromacs_mpi.so.7 - md_support.cpp:139-157 [...] | calc_ke_part_normal(gmx::ArrayRef<gmx::BasicVector<float> const>, t_grpopts const*, t_mdatoms const*, gmx_ekindata_t*, t_nrnb*, bool) [clone ._omp_fn.0] | Innermost | 0.07 | 0.08 | 0.05 | 52 | 152.20 | 0 | 6.61 | 1.18 | 1.1 | 17.66 | 1.6 | NA | NA | NA | NA | NA |
2253 | libgromacs_mpi.so.7 - kernel_outer.h:581-581 [...] | nbnxm_kernel_ElecEw_VdwLJCombLB_VF_2xmm(NbnxnPairlistCpu const*, nbnxn_atomdata_t const*, interaction_const_t const*, float const (*) [3], nbnxn_atomdata_output_t*) | Innermost | 0.07 | 0.1 | 0.05 | 49 | 1782.40 | 99.07 | 91.32 | 1 | 1 | 1.01 | 2 | 2 | 0 | 1 | 1 | 2 |
2732 | libgromacs_mpi.so.7 - atomdata.cpp:1106-1109 [...] | nbnxn_atomdata_add_nbat_f_to_f_reduce(nbnxn_atomdata_t*, int) [clone ._omp_fn.0] | InBetween | 0.07 | 0.45 | 0.05 | 19 | 19.20 | 56.25 | 61.72 | 2.2 | 1 | 1.14 | 3.46 | NA | NA | NA | NA | NA |
2731 | libgromacs_mpi.so.7 - atomdata.cpp:1109-1109 [...] | nbnxn_atomdata_add_nbat_f_to_f_reduce(nbnxn_atomdata_t*, int) [clone ._omp_fn.0] | Innermost | 0.06 | 0.42 | 0.04 | 20 | 12.00 | 100 | 100 | 1 | 1 | 1 | 3.82 | 0 | 1 | 0 | 0 | 4 |
2245 | libgromacs_mpi.so.7 - kernel_outer.h:575-578 [...] | nbnxm_kernel_ElecEw_VdwLJCombLB_F_2xmm(NbnxnPairlistCpu const*, nbnxn_atomdata_t const*, interaction_const_t const*, float const (*) [3], nbnxn_atomdata_output_t*) | Innermost | 0.06 | 0.1 | 0.04 | 48 | 1580.00 | 94.25 | 84.84 | 1.03 | 1 | 1.01 | 2 | 2 | 1 | 1 | 1 | 3 |
14338 | libgromacs_mpi.so.7 - update.cpp:361-387 [...] | gmx::Update::Impl::update_coords(t_inputrec const&, long, int, bool, gmx::ArrayRef<ParticleType const>, gmx::ArrayRef<float const>, gmx::ArrayRef<float const [3]>, t_state*, gmx::ArrayRefWithPadding<gmx::BasicVector<float> co... | Innermost | 0.06 | 0.06 | 0.04 | 52 | 105.75 | 35.9 | 12.34 | 1.15 | 1.41 | 9.22 | 1.5 | 1 | 1 | 5 | 2 | 0 |
4258 | libgromacs_mpi.so.7 - idef.h:232-235 [...] | dd_make_local_constraints(gmx_domdec_t*, int, gmx_mtop_t const&, gmx::ArrayRef<long const>, gmx::Constraints*, int, gmx::ArrayRef<InteractionList>) [clone ._omp_fn.0] | InBetween | 0.04 | 0.06 | 0.03 | 50 | 0.00 | 0 | 9.32 | 4.81 | 1 | 20.83 | 2 | NA | NA | NA | NA | NA |
15809 | libgromacs_mpi.so.7 - pme_solve.cpp:486-496 | solve_pme_yzx(gmx_pme_t const*, t_complex*, float, bool, int, int) | Innermost | 0.04 | 0.06 | 0.03 | 52 | 136.33 | 0 | 6.25 | 1.04 | 1.23 | 16 | 2 | 0 | 2 | 1 | 0 | 0 |
15812 | libgromacs_mpi.so.7 - pme_solve.cpp:441-454 | solve_pme_yzx(gmx_pme_t const*, t_complex*, float, bool, int, int) | Innermost | 0.04 | 0.05 | 0.03 | 52 | 142.00 | 5.26 | 7.24 | 1.04 | 1.04 | 16 | 1.67 | 0 | 0 | 14 | 0 | 0 |
15811 | libgromacs_mpi.so.7 - pme_solve.cpp:457-470 | solve_pme_yzx(gmx_pme_t const*, t_complex*, float, bool, int, int) | Innermost | 0.04 | 0.05 | 0.03 | 52 | 154.00 | 4.65 | 7.12 | 1.04 | 1.04 | 16 | 1.67 | 0 | 0 | 14 | 0 | 0 |
13590 | libgromacs_mpi.so.7 - calcvir.cpp:61-81 [...] | calc_x_times_f(int, float const (*) [3], float const (*) [3], bool, float const (*) [3], float (*) [3]) | Single | 0.04 | 0.07 | 0.03 | 52 | 85.33 | 0 | 6.25 | 1 | 1 | 16 | 2.33 | NA | NA | NA | NA | NA |
15581 | libgromacs_mpi.so.7 - pairs.cpp:606-824 [...] | do_pairs(int, int, int const*, t_iparams const*, float const (*) [3], float (*) [4], float (*) [3], t_pbc const*, float const*, float*, gmx::ArrayRef<float>, gmx::ArrayRef<float>, gmx::ArrayRef<bool>, gmx::ArrayRef<unsigned short>, ... | Single | 0.04 | 0.05 | 0.03 | 52 | 68.00 | 18.02 | 9.68 | 2.06 | 1.73 | 20.73 | 1.67 | NA | NA | NA | NA | NA |
3729 | libgromacs_mpi.so.7 - new_allocator.h:187-187 [...] | PairlistSet::constructPairlists(gmx::InteractionLocality, Nbnxm::GridSet const&, gmx::ArrayRef<PairsearchWork>, nbnxn_atomdata_t*, gmx::ListOfLists<int> const&, int, t_nrnb*, SearchCycleCounting*) [clone ._omp_fn.0] | InBetween | 0.04 | 0.06 | 0.03 | 52 | 14.00 | 12.05 | 14.21 | 2.85 | 1.02 | 1.43 | 2 | NA | NA | NA | NA | NA |
2725 | libgromacs_mpi.so.7 - kernel_prune.cpp:76-163 [...] | nbnxn_kernel_prune_2xnn(NbnxnPairlistCpu*, nbnxn_atomdata_t const*, gmx::ArrayRef<gmx::BasicVector<float> const>, float) | Outermost | 0.04 | 0.06 | 0.03 | 52 | 469.33 | 42.65 | 41.18 | 1.59 | 1 | 1.35 | 2 | NA | NA | NA | NA | NA |
14253 | libgromacs_mpi.so.7 - vec.h:141-147 | sum_forces(gmx::ArrayRef<gmx::BasicVector<float> >, gmx::ArrayRef<gmx::BasicVector<float> const>) [clone ._omp_fn.0] | Single | 0.03 | 0.05 | 0.02 | 50 | 38.00 | 28.57 | 11.61 | 1 | 1 | 9.44 | 2.5 | 0 | 0 | 1 | 1 | 0 |
14005 | libgromacs_mpi.so.7 - lincs.cpp:1087-1089 [...] | gmx::do_lincs(gmx::ArrayRefWithPadding<gmx::BasicVector<float> const>, gmx::ArrayRefWithPadding<gmx::BasicVector<float> >, float const (*) [3], t_pbc*, gmx::Lincs*, int, gmx::ArrayRef<float const>, t_commrec const*, bool, floa... | Innermost | 0.03 | 0.05 | 0.02 | 44 | 41.50 | 0 | 6.25 | 1 | 1.13 | 16 | 2.5 | 1 | 3 | 0 | 2 | 0 |
2730 | libgromacs_mpi.so.7 - atomdata.cpp:1053-1223 [...] | nbnxn_atomdata_add_nbat_f_to_f_reduce(nbnxn_atomdata_t*, int) [clone ._omp_fn.0] | InBetween | 0.03 | 0.05 | 0.02 | 50 | 264.00 | 17.14 | 11.88 | 3.02 | 1 | 20.95 | 2.5 | NA | NA | NA | NA | NA |
5089 | libgromacs_mpi.so.7 - threaded_force_buffer.cpp:200-200 [...] | void gmx::(anonymous namespace)::reduceThreadForceBuffers<float [4]>(gmx::ArrayRef<gmx::BasicVector<float> >, gmx::ArrayRef<std::unique_ptr<gmx::ThreadForceBuffer<float [4]>, std::default_delete<gmx::ThreadForceBuffer<fl... | Innermost | 0.03 | 0.13 | 0.02 | 39 | 9.00 | 28.57 | 11.61 | 1 | 1 | 9.44 | 4.33 | 0 | 0 | 1 | 1 | 0 |
15810 | libgromacs_mpi.so.7 - pme_solve.cpp:473-475 | solve_pme_yzx(gmx_pme_t const*, t_complex*, float, bool, int, int) | Innermost | 0.03 | 0.04 | 0.02 | 51 | 30.50 | 0 | 6.25 | 1 | 3 | 4 | 2 | 0 | 2 | 0 | 0 | 0 |
14000 | libgromacs_mpi.so.7 - lincs.cpp:1155-1155 [...] | gmx::do_lincs(gmx::ArrayRefWithPadding<gmx::BasicVector<float> const>, gmx::ArrayRefWithPadding<gmx::BasicVector<float> >, float const (*) [3], t_pbc*, gmx::Lincs*, int, gmx::ArrayRef<float const>, t_commrec const*, bool, floa... | Innermost | 0.03 | 0.07 | 0.02 | 50 | 56.00 | 100 | 100 | 1 | 1 | 1 | 3.5 | 1 | 1 | 6 | 0 | 0 |
15473 | libgromacs_mpi.so.7 - bonded.cpp:1981-2010 [...] | std::enable_if<(((BondedKernelFlavor)2)!=((BondedKernelFlavor)0))||(!(1)), float>::type (anonymous namespace)::pdihs<(BondedKernelFlavor)2>(int, int const*, t_iparams const*, float const (*) [3], float (*) [4], float (*) [3], t_pbc const*, floa... | Outermost | 0.03 | 0.04 | 0.02 | 52 | 26.00 | 28.57 | 11.61 | 4.8 | 1 | 16 | 2 | 1 | 0 | 0 | 4 | 0 |
3685 | libgromacs_mpi.so.7 - pairlist.cpp:3624-3624 [...] | rebalanceSimpleLists(gmx::ArrayRef<NbnxnPairlistCpu const>, gmx::ArrayRef<NbnxnPairlistCpu>, gmx::ArrayRef<PairsearchWork>) [clone ._omp_fn.0] | Innermost | 0.03 | 0.05 | 0.02 | 49 | 0.00 | 6.25 | 12.24 | 1.63 | 1 | 9.45 | 2.5 | 3 | 0.5 | 0 | 0.5 | 0.5 |
15435 | libgromacs_mpi.so.7 - bonded.cpp:2138-2254 [...] | std::enable_if<((BondedKernelFlavor)0)==((BondedKernelFlavor)0), float>::type (anonymous namespace)::rbdihs<(BondedKernelFlavor)0>(int, int const*, t_iparams const*, float const (*) [3], float (*) [4], float (*) [3], t_pbc const*, float, float*... | Outermost | 0.02 | 0.06 | 0.01 | 30 | 776.00 | 71.66 | 35.37 | 1.11 | 1.06 | 1.9 | 3 | 2 | 0 | 0 | 16 | 0 |
15871 | libgromacs_mpi.so.7 - pme_spread.cpp:277-284 [...] | spread_on_grid(gmx_pme_t const*, PmeAtomComm*, pmegrids_t const*, bool, bool, float*, bool, int) [clone ._omp_fn.1] | Innermost | 0.02 | 0.05 | 0.01 | 52 | 81.00 | 0 | 6.94 | 1.18 | 1 | 15.7 | 5 | 0 | 0 | 0 | 2 | 1 |
4424 | libgromacs_mpi.so.7 - hashedmap.h:274-282 [...] | int assignInteractionsForAtom<true>(AtomIndexSet const&, reverse_ilist_t const&, gmx_ga2la_t const&, gmx_domdec_zones_t const&, bool, int const*, bool, float, t_pbc const*, gmx::ArrayRef<gmx::BasicVector<float> const>, Int... | Outermost | 0.02 | 0.06 | 0.02 | 43 | 0.00 | 0 | 8.92 | 3.71 | 1 | 21.33 | 3 | NA | NA | NA | NA | NA |
14078 | libgromacs_mpi.so.7 - mdatoms.cpp:336-497 [...] | atoms2md(gmx_mtop_t const&, t_inputrec const&, int, gmx::ArrayRef<int>, int, gmx::MDAtoms*) [clone ._omp_fn.0] | Outermost | 0.02 | 0.04 | 0.01 | 49 | 2.00 | 12.65 | 9.81 | 2.46 | 2.3 | 8.07 | 4 | NA | NA | NA | NA | NA |
15716 | libgromacs_mpi.so.7 - pme_grid.cpp:395-404 | copy_fftgrid_to_pmegrid(gmx_pme_t*, float const*, float*, int, int, int) | Outermost | 0.02 | 0.04 | 0.01 | 47 | 0.00 | 0 | 8.2 | 2.46 | 1 | 11.5 | 4 | NA | NA | NA | NA | NA |
4440 | libgromacs_mpi.so.7 - hashedmap.h:274-282 [...] | void make_exclusions_zone<true>(gmx::ArrayRef<int const>, gmx_ga2la_t const&, gmx_domdec_zones_t const&, gmx::ArrayRef<MolblockIndices const>, std::vector<gmx_moltype_t, std::allocator<gmx_moltype_t> > const&, gmx:... | InBetween | 0.02 | 0.03 | 0.02 | 51 | 0.00 | 0 | 9.23 | 1 | 1 | 26.67 | 1.5 | NA | NA | NA | NA | NA |
15693 | libgromacs_mpi.so.7 - pme_grid.cpp:520-522 | unwrap_periodic_pmegrid(gmx_pme_t*, float*) [clone ._omp_fn.0] | Innermost | 0.02 | 0.04 | 0.02 | 47 | 0.00 | 0 | 6.25 | 1 | 1 | 16 | 2 | 0 | 2 | 0 | 0 | 0 |
14327 | libgromacs_mpi.so.7 - stl_vector.h:1258-1263 [...] | gmx::Update::Impl::update_coords(t_inputrec const&, long, int, bool, gmx::ArrayRef<ParticleType const>, gmx::ArrayRef<float const>, gmx::ArrayRef<float const [3]>, t_state*, gmx::ArrayRefWithPadding<gmx::BasicVector<float> co... | InBetween | 0.02 | 0.03 | 0.01 | 44 | 32.00 | 27.48 | 18.67 | 2.19 | 1.08 | 1.7 | 3 | NA | NA | NA | NA | NA |
2861 | libgromacs_mpi.so.7 - grid.cpp:329-407 [...] | Nbnxm::sort_atoms(int, bool, int, bool, int*, int, gmx::ArrayRef<gmx::BasicVector<float> const>, float, float, int, gmx::ArrayRef<int>) [clone .isra.0] | Outermost | 0.01 | 0.03 | 0 | 26 | 0.00 | 0 | 8.04 | 3.55 | 1.97 | 14.74 | 3 | NA | NA | NA | NA | NA |
14037 | libgromacs_mpi.so.7 - new_allocator.h:187-187 [...] | gmx::lincs_thread_setup(gmx::Lincs*, int) [clone ._omp_fn.0] | Innermost | 0.01 | 0.02 | 0.01 | 38 | 0.00 | 0 | 11.01 | 1 | 1 | 12.18 | 2 | NA | NA | NA | NA | NA |
4427 | libgromacs_mpi.so.7 - stl_vector.h:1145-1145 [...] | int assignInteractionsForAtom<true>(AtomIndexSet const&, reverse_ilist_t const&, gmx_ga2la_t const&, gmx_domdec_zones_t const&, bool, int const*, bool, float, t_pbc const*, gmx::ArrayRef<gmx::BasicVector<float> const>, Int... | InBetween | 0.01 | 0.02 | 0 | 27 | 0.00 | 0 | 6.89 | 1 | 1 | 16 | 2 | 0.67 | 1.67 | 0 | 1 | 0 |
4437 | libgromacs_mpi.so.7 - stl_vector.h:990-1936 [...] | void make_exclusions_zone<true>(gmx::ArrayRef<int const>, gmx_ga2la_t const&, gmx_domdec_zones_t const&, gmx::ArrayRef<MolblockIndices const>, std::vector<gmx_moltype_t, std::allocator<gmx_moltype_t> > const&, gmx:... | Outermost | 0.01 | 0.03 | 0 | 30 | 0.00 | 0 | 11.14 | 1 | 1 | 12.46 | 3 | NA | NA | NA | NA | NA |
15850 | libgromacs_mpi.so.7 - pme_spread.cpp:633-641 | spread_on_grid(gmx_pme_t const*, PmeAtomComm*, pmegrids_t const*, bool, bool, float*, bool, int) [clone ._omp_fn.2] | InBetween | 0.01 | 0.02 | 0.01 | 44 | 10.00 | 0 | 6.25 | 3 | 1 | 16 | 2 | NA | NA | NA | NA | NA |
15927 | libgromacs_mpi.so.7 - fft5d.cpp:943-949 | fft5d_execute(fft5d_plan_t*, int, gmx_wallcycle*) | InBetween | 0.01 | 0.02 | 0.01 | 41 | 0.00 | 0 | 12.04 | 1 | 1 | 11.43 | 2 | NA | NA | NA | NA | NA |
15855 | libgromacs_mpi.so.7 - pme_spread.cpp:186-988 [...] | spread_on_grid(gmx_pme_t const*, PmeAtomComm*, pmegrids_t const*, bool, bool, float*, bool, int) [clone ._omp_fn.1] | InBetween | 0.01 | 0.02 | 0 | 30 | 0.00 | 17.14 | 11.58 | 2.82 | 1 | 26.39 | 2 | NA | NA | NA | NA | NA |
2860 | libgromacs_mpi.so.7 - grid.cpp:415-420 | Nbnxm::sort_atoms(int, bool, int, bool, int*, int, gmx::ArrayRef<gmx::BasicVector<float> const>, float, float, int, gmx::ArrayRef<int>) [clone .isra.0] | Single | 0.01 | 0.02 | 0.01 | 27 | 0.00 | 0 | 6.25 | 1 | 1 | 16 | 2 | NA | NA | NA | NA | NA |
14035 | libgromacs_mpi.so.7 - stl_vector.h:1126-1289 [...] | gmx::lincs_thread_setup(gmx::Lincs*, int) [clone ._omp_fn.1] | Innermost | 0.01 | 0.02 | 0 | 29 | 0.00 | 0 | 9.72 | 1 | 1 | 15.11 | 2 | NA | NA | NA | NA | NA |
3732 | libgromacs_mpi.so.7 - pairlist.cpp:1991-1995 | PairlistSet::constructPairlists(gmx::InteractionLocality, Nbnxm::GridSet const&, gmx::ArrayRef<PairsearchWork>, nbnxn_atomdata_t*, gmx::ListOfLists<int> const&, int, t_nrnb*, SearchCycleCounting*) [clone ._omp_fn.0] | Innermost | 0.01 | 0.02 | 0.01 | 39 | 0.00 | 0 | 9.05 | 1 | 1 | 12.75 | 2 | NA | NA | NA | NA | NA |
3727 | libgromacs_mpi.so.7 - pairlist.cpp:3207-3238 [...] | PairlistSet::constructPairlists(gmx::InteractionLocality, Nbnxm::GridSet const&, gmx::ArrayRef<PairsearchWork>, nbnxn_atomdata_t*, gmx::ListOfLists<int> const&, int, t_nrnb*, SearchCycleCounting*) [clone ._omp_fn.0] | Innermost | 0.01 | 0.02 | 0 | 29 | 0.00 | 10.26 | 8.17 | 1.49 | 1.17 | 15.16 | 2 | NA | NA | NA | NA | NA |
15543 | libgromacs_mpi.so.7 - manage_threading.cpp:127-170 [...] | divide_bondeds_over_threads(bonded_threading_t*, bool, InteractionDefinitions const&) | InBetween | 0.01 | 0.44 | 0.01 | 1 | 0.00 | 0 | 8.68 | 1 | 1 | 14.73 | 1 | NA | NA | NA | NA | NA |
3731 | libgromacs_mpi.so.7 - pairlist.cpp:1981-1985 | PairlistSet::constructPairlists(gmx::InteractionLocality, Nbnxm::GridSet const&, gmx::ArrayRef<PairsearchWork>, nbnxn_atomdata_t*, gmx::ListOfLists<int> const&, int, t_nrnb*, SearchCycleCounting*) [clone ._omp_fn.0] | Innermost | 0.01 | 0.03 | 0.01 | 37 | 0.00 | 0 | 8.93 | 1 | 1 | 13.33 | 3 | NA | NA | NA | NA | NA |
3686 | libgromacs_mpi.so.7 - stl_vector.h:990-1289 [...] | rebalanceSimpleLists(gmx::ArrayRef<NbnxnPairlistCpu const>, gmx::ArrayRef<NbnxnPairlistCpu>, gmx::ArrayRef<PairsearchWork>) [clone ._omp_fn.0] | Innermost | 0.01 | 0.04 | 0.01 | 37 | 0.00 | 16.23 | 12.5 | 4.08 | 1 | 8.83 | 4 | 2.5 | 0.5 | 1 | 2 | 0.5 |
5134 | libgromacs_mpi.so.7 - threaded_force_buffer.cpp:122-122 [...] | gmx::ThreadForceBuffer<float [4]>::resizeBufferAndClearMask(int) | Single | 0.01 | 0.01 | 0 | 27 | 0.00 | 100 | 25 | 1 | 1 | 4 | 1 | 0 | 1 | 0 | 0 | 0 |
5138 | libgromacs_mpi.so.7 - threaded_force_buffer.cpp:278-278 [...] | gmx::ThreadedForceBuffer<float [4]>::setupReduction() | Innermost | 0.01 | 0.34 | 0.01 | 1 | 0.00 | 0 | 12.5 | 1 | 1 | 8 | 1 | 1 | 0 | 2 | 1 | 3 |
3737 | libgromacs_mpi.so.7 - stl_algobase.h:262-262 [...] | PairlistSet::constructPairlists(gmx::InteractionLocality, Nbnxm::GridSet const&, gmx::ArrayRef<PairsearchWork>, nbnxn_atomdata_t*, gmx::ListOfLists<int> const&, int, t_nrnb*, SearchCycleCounting*) [clone ._omp_fn.0] | InBetween | 0.01 | 0.02 | 0.01 | 45 | 0.00 | 0 | 9.23 | 2.28 | 1 | 14.3 | 2 | NA | NA | NA | NA | NA |
13974 | libgromacs_mpi.so.7 - lincs.cpp:1255-1353 [...] | gmx::set_lincs_matrix(gmx::Lincs*, gmx::ArrayRef<float const>, float) [clone ._omp_fn.0] | InBetween | 0.01 | 0.02 | 0.01 | 37 | 4.00 | 9.52 | 10.42 | 1.97 | 3.04 | 15.56 | 2 | NA | NA | NA | NA | NA |
3742 | libgromacs_mpi.so.7 - pairlist.cpp:2922-3472 [...] | PairlistSet::constructPairlists(gmx::InteractionLocality, Nbnxm::GridSet const&, gmx::ArrayRef<PairsearchWork>, nbnxn_atomdata_t*, gmx::ListOfLists<int> const&, int, t_nrnb*, SearchCycleCounting*) [clone ._omp_fn.0] | InBetween | 0.01 | 0.02 | 0.01 | 39 | 33.00 | 7.69 | 7.51 | 1.43 | 2.1 | 24.22 | 2 | NA | NA | NA | NA | NA |
15535 | libgromacs_mpi.so.7 - threaded_force_buffer.h:110-110 [...] | setup_bonded_threading(bonded_threading_t*, int, bool, InteractionDefinitions const&) [clone ._omp_fn.0] | InBetween | 0.01 | 0.02 | 0.01 | 44 | 0.00 | 0 | 11.9 | 1 | 1 | 13.31 | 2 | NA | NA | NA | NA | NA |
15731 | libgromacs_mpi.so.7 - pme_grid.cpp:502-504 | unwrap_periodic_pmegrid(gmx_pme_t*, float*) | Innermost | 0.01 | 0.47 | 0.01 | 1 | 0.00 | 0 | 6.25 | 1 | 1 | 16 | 1 | 0 | 2 | 0 | 0 | 0 |
5088 | libgromacs_mpi.so.7 - threaded_force_buffer.cpp:178-211 [...] | void gmx::(anonymous namespace)::reduceThreadForceBuffers<float [4]>(gmx::ArrayRef<gmx::BasicVector<float> >, gmx::ArrayRef<std::unique_ptr<gmx::ThreadForceBuffer<float [4]>, std::default_delete<gmx::ThreadForceBuffer<fl... | Outermost | 0.01 | 0.02 | 0.01 | 46 | 31.00 | 21.74 | 11.72 | 2.09 | 2.73 | 19.59 | 2 | NA | NA | NA | NA | NA |
15478 | libgromacs_mpi.so.7 - bonded.cpp:2290-2327 [...] | float (anonymous namespace)::idihs<(BondedKernelFlavor)0>(int, int const*, t_iparams const*, float const (*) [3], float (*) [4], float (*) [3], t_pbc const*, float, float*, gmx::ArrayRef<float const>, t_fcdata*, t_disresdata*, t_oriresdata*, in... | Single | 0.01 | 0.04 | 0.01 | 25 | 44.00 | 0 | 7.84 | 1.94 | 2.31 | 14.05 | 4 | 2 | 1 | 0 | 1 | 0 |
15474 | libgromacs_mpi.so.7 - bonded.cpp:1996-2008 [...] | std::enable_if<(((BondedKernelFlavor)2)!=((BondedKernelFlavor)0))||(!(1)), float>::type (anonymous namespace)::pdihs<(BondedKernelFlavor)2>(int, int const*, t_iparams const*, float const (*) [3], float (*) [4], float (*) [3], t_pbc const*, floa... | Innermost | 0.01 | 0.02 | 0.01 | 37 | 8.00 | 0 | 6.91 | 2 | 1.19 | 14.4 | 2 | 1 | 1 | 0 | 1 | 0 |
14020 | libgromacs_mpi.so.7 - lincs.cpp:1936-1962 [...] | gmx::set_lincs(InteractionDefinitions const&, int, gmx::ArrayRef<float const>, float, bool, t_commrec const*, gmx::Lincs*) [clone ._omp_fn.0] | InBetween | 0.01 | 0.02 | 0.01 | 35 | 0.00 | 0 | 9.67 | 2.79 | 1 | 33.91 | 2 | NA | NA | NA | NA | NA |
15924 | libgromacs_mpi.so.7 - fft5d.cpp:789-1407 [...] | fft5d_execute(fft5d_plan_t*, int, gmx_wallcycle*) | Outermost | 0.01 | 0.03 | 0.01 | 43 | 0.00 | 0 | 8.25 | 9.4 | 1 | 7.83 | 3 | NA | NA | NA | NA | NA |
15806 | libgromacs_mpi.so.7 - pme_solve.cpp:234-234 [...] | solve_pme_yzx(gmx_pme_t const*, t_complex*, float, bool, int, int) | Innermost | 0.01 | 0.02 | 0.01 | 49 | 1224.00 | 100 | 100 | 1 | 1 | 1 | 2 | 0 | 2 | 1 | 0 | 0 |
15472 | libgromacs_mpi.so.7 - bonded.cpp:2960-3032 [...] | std::enable_if<(((BondedKernelFlavor)2)!=((BondedKernelFlavor)0))||(!(1)), float>::type (anonymous namespace)::rbdihs<(BondedKernelFlavor)2>(int, int const*, t_iparams const*, float const (*) [3], float (*) [4], float (*) [3], t_pbc const*, flo... | Single | 0.01 | 0.03 | 0 | 21 | 0.00 | 26.32 | 10.61 | 1.83 | 3.69 | 13.26 | 3 | 2 | 1 | 0 | 2 | 0 |
3740 | libgromacs_mpi.so.7 - pairlist.cpp:607-1332 [...] | PairlistSet::constructPairlists(gmx::InteractionLocality, Nbnxm::GridSet const&, gmx::ArrayRef<PairsearchWork>, nbnxn_atomdata_t*, gmx::ListOfLists<int> const&, int, t_nrnb*, SearchCycleCounting*) [clone ._omp_fn.0] | Innermost | 0.01 | 0.03 | 0.01 | 41 | 0.00 | 0 | 6.25 | 1 | 1 | 16 | 3 | NA | NA | NA | NA | NA |
15436 | libgromacs_mpi.so.7 - bonded.cpp:2185-2213 | std::enable_if<((BondedKernelFlavor)0)==((BondedKernelFlavor)0), float>::type (anonymous namespace)::rbdihs<(BondedKernelFlavor)0>(int, int const*, t_iparams const*, float const (*) [3], float (*) [4], float (*) [3], t_pbc const*, float, float*... | Innermost | 0.01 | 0.05 | 0.01 | 29 | 8.00 | 0 | 6.25 | 1.9 | 1 | 16 | 5 | 1 | 0 | 0 | 11 | 0 |
14004 | libgromacs_mpi.so.7 - lincs.cpp:1098-1098 [...] | gmx::do_lincs(gmx::ArrayRefWithPadding<gmx::BasicVector<float> const>, gmx::ArrayRefWithPadding<gmx::BasicVector<float> >, float const (*) [3], t_pbc*, gmx::Lincs*, int, gmx::ArrayRef<float const>, t_commrec const*, bool, floa... | Single | 0.01 | 0.02 | 0.01 | 34 | 96.00 | 100 | 100 | 1 | 1 | 1 | 2 | 0 | 1 | 4 | 0 | 0 |
15883 | libgromacs_mpi.so.7 - pme_spread.cpp:71-918 [...] | spread_on_grid(gmx_pme_t const*, PmeAtomComm*, pmegrids_t const*, bool, bool, float*, bool, int) [clone ._omp_fn.0] | Outermost | 0.01 | 0.03 | 0 | 26 | 0.00 | 2.94 | 8.92 | 2.83 | 1 | 14.72 | 3 | NA | NA | NA | NA | NA |
2752 | libgromacs_mpi.so.7 - atomdata.cpp:1149-1268 [...] | reduceForces(nbnxn_atomdata_t*, gmx::AtomLocality, Nbnxm::GridSet const&, float (*) [3]) [clone ._omp_fn.0] | Outermost | 0.01 | 0.01 | 0 | 23 | 0.00 | 0 | 6.44 | 1.97 | 2.22 | 15.77 | 1 | NA | NA | NA | NA | NA |
13999 | libgromacs_mpi.so.7 - lincs.cpp:919-1173 [...] | gmx::do_lincs(gmx::ArrayRefWithPadding<gmx::BasicVector<float> const>, gmx::ArrayRefWithPadding<gmx::BasicVector<float> >, float const (*) [3], t_pbc*, gmx::Lincs*, int, gmx::ArrayRef<float const>, t_commrec const*, bool, floa... | InBetween | 0.01 | 0.02 | 0.01 | 31 | 32.00 | 66.23 | 61.38 | 1.93 | 1 | 1.19 | 2 | NA | NA | NA | NA | NA |
3728 | libgromacs_mpi.so.7 - pairlist.cpp:3238-3267 | PairlistSet::constructPairlists(gmx::InteractionLocality, Nbnxm::GridSet const&, gmx::ArrayRef<PairsearchWork>, nbnxn_atomdata_t*, gmx::ListOfLists<int> const&, int, t_nrnb*, SearchCycleCounting*) [clone ._omp_fn.0] | Innermost | 0.01 | 0.02 | 0 | 27 | 0.00 | 2.44 | 6.86 | 1.75 | 1.21 | 15.74 | 2 | NA | NA | NA | NA | NA |
13595 | libgromacs_mpi.so.7 - constr.cpp:592-607 [...] | gmx::Constraints::Impl::apply(bool, bool, long, int, float, gmx::ArrayRefWithPadding<gmx::BasicVector<float> >, gmx::ArrayRefWithPadding<gmx::BasicVector<float> >, gmx::ArrayRef<gmx::BasicVector<float> >, float const (*)... | Single | 0.01 | 0.02 | 0 | 29 | 0.00 | 28.14 | 15.06 | 3.41 | 1 | 7.18 | 2 | 3 | 0 | 0 | 0.33 | 3 |
3794 | libgromacs_mpi.so.7 - stl_algobase.h:918-919 | std::vector<std::array<unsigned long, 2ul>, std::allocator<std::array<unsigned long, 2ul> > >::_M_fill_insert(__gnu_cxx::__normal_iterator<std::array<unsigned long, 2ul>*, std::vector<std::array<unsigned long, 2ul>... | Single | 0.01 | 0.03 | 0.01 | 37 | 0.00 | 100 | 25 | 1 | 1 | 4 | 3 | 0 | 1 | 0 | 0 | 0 |
13996 | libgromacs_mpi.so.7 - lincs.cpp:1215-1223 | gmx::do_lincs(gmx::ArrayRefWithPadding<gmx::BasicVector<float> const>, gmx::ArrayRefWithPadding<gmx::BasicVector<float> >, float const (*) [3], t_pbc*, gmx::Lincs*, int, gmx::ArrayRef<float const>, t_commrec const*, bool, floa... | Innermost | 0.01 | 0.03 | 0.01 | 51 | 99.00 | 3.03 | 6.82 | 1 | 1 | 16 | 3 | 1 | 1 | 3 | 0 | 0 |
2252 | libgromacs_mpi.so.7 - kernel_outer.h:575-578 [...] | nbnxm_kernel_ElecEw_VdwLJCombLB_VF_2xmm(NbnxnPairlistCpu const*, nbnxn_atomdata_t const*, interaction_const_t const*, float const (*) [3], nbnxn_atomdata_output_t*) | Innermost | 0.01 | 0.02 | 0.01 | 42 | 992.00 | 97.3 | 89.81 | 1.02 | 1 | 1.01 | 2 | 3 | 1 | 1 | 1 | 3 |
4259 | libgromacs_mpi.so.7 - ga2la.h:112-126 [...] | dd_make_local_constraints(gmx_domdec_t*, int, gmx_mtop_t const&, gmx::ArrayRef<long const>, gmx::Constraints*, int, gmx::ArrayRef<InteractionList>) [clone ._omp_fn.0] | InBetween | 0.01 | 0.02 | 0 | 28 | 0.00 | 0 | 6.25 | 1 | 1 | 16 | 2 | NA | NA | NA | NA | NA |
15926 | libgromacs_mpi.so.7 - fft5d.cpp:939-949 | fft5d_execute(fft5d_plan_t*, int, gmx_wallcycle*) | InBetween | 0.01 | 0.02 | 0 | 27 | 0.00 | 0 | 10.27 | 4.33 | 1 | 13.09 | 2 | NA | NA | NA | NA | NA |
15519 | libgromacs_mpi.so.7 - listed_forces.cpp:419-445 [...] | calcBondedForces(InteractionDefinitions const&, bonded_threading_t*, float const (*) [3], t_forcerec const*, t_pbc const*, float (*) [3], gmx_enerdata_t*, t_nrnb*, gmx::ArrayRef<float const>, gmx::ArrayRef<float>, t_mdatoms const*, t_fcdata... | Innermost | 0.01 | 0.02 | 0.01 | 29 | 0.00 | 0 | 7.37 | 7.38 | 5.44 | 44.52 | 2 | NA | NA | NA | NA | NA |
2871 | libgromacs_mpi.so.7 - grid.cpp:816-866 [...] | Nbnxm::Grid::fillCell(Nbnxm::GridSetData*, nbnxn_atomdata_t*, int, int, gmx::ArrayRef<long const>, gmx::ArrayRef<gmx::BasicVector<float> const>, Nbnxm::BoundingBox*) | Outermost | 0.01 | 0.02 | 0 | 26 | 0.00 | 0 | 7.16 | 3.91 | 1 | 15.45 | 2 | NA | NA | NA | NA | NA |