* Info: Detected 1 Lprof instances in ip-172-31-47-199: processes-per-node/ppn set accordingly.
If this is incorrect, rerun with an explicit value for this setting
[0m
* Info: Selecting the 'perf-low-ppn' engine for node ip-172-31-47-199
[0m
* Info: "ref-cycles" not supported on ip-172-31-47-199: fallback to "cpu-clock"[0m
* Info: Process launched (host ip-172-31-47-199, process 77944)[0mFri Dec 15 16:11:28 2023: Starting Initialization
Mini-Application Name : CoMD-openmp-mpi
Mini-Application Version : 1.1
Platform:
hostname: ip-172-31-47-199
kernel name: 'Linux'
kernel release: '5.15.0-1050-aws'
processor: 'aarch64'
Build:
CC: '/home/hbollore/openmpi/arm-23-04/bin/mpicc'
compiler version: 'gcc (Ubuntu 11.1.0-1ubuntu1~20.04) 11.1.0'
CFLAGS: '-O3 -mcpu=native -DDO_MPI -O3 -mcpu=native -fno-tree-vectorize -fno-openmp-simd -funroll-loops -larmpl -g -fno-omit-frame-pointer -fcf-protection=none -no-pie -fopenmp -funroll-loops'
LDFLAGS: ' '
using MPI: true
Threading: OpenMP (64 threads)
Double Precision: true
Run Date/Time: 2023-12-15, 16:11:28
Command Line Parameters:
doeam: 0
potDir: pots
potName: Cu_u6.eam
potType: funcfl
nx: 100
ny: 100
nz: 100
xproc: 1
yproc: 1
zproc: 1
Lattice constant: -1 Angstroms
nSteps: 100
printRate: 10
Time step: 1 fs
Initial Temperature: 600 K
Initial Delta: 0 Angstroms
Simulation data:
Total atoms : 4000000
Min global bounds : [ 0.0000000000, 0.0000000000, 0.0000000000 ]
Max global bounds : [ 361.5000000000, 361.5000000000, 361.5000000000 ]
Decomposition data:
Processors : 1, 1, 1
Local boxes : 62, 62, 62 = 238328
Box size : [ 5.8306451613, 5.8306451613, 5.8306451613 ]
Box factor : [ 1.0074548875, 1.0074548875, 1.0074548875 ]
Max Link Cell Occupancy: 32 of 64
Potential data:
Potential type : Lennard-Jones
Species name : Cu
Atomic number : 29
Mass : 63.55 amu
Lattice Type : FCC
Lattice spacing : 3.615 Angstroms
Cutoff : 5.7875 Angstroms
Epsilon : 0.167 eV
Sigma : 2.315 Angstroms
Initial energy : -1.166063303520, atom count : 4000000
Fri Dec 15 16:11:28 2023: Initialization Finished
Fri Dec 15 16:11:28 2023: Starting simulation
# Performance
# Loop Time(fs) Total Energy Potential Energy Kinetic Energy Temperature (us/atom) # Atoms
0 0.00 -1.166063303520 -1.243619295120 0.077555991600 600.0000 0.0000 4000000
10 10.00 -1.166059650500 -1.233157709949 0.067098059449 519.0938 0.0421 4000000
20 20.00 -1.166048438416 -1.208183014318 0.042134575902 325.9677 0.0454 4000000
30 30.00 -1.166037590737 -1.186586197151 0.020548606414 158.9711 0.0461 4000000
40 40.00 -1.166042093134 -1.183625399859 0.017583306724 136.0305 0.0461 4000000
50 50.00 -1.166051684893 -1.193713710258 0.027662025365 214.0030 0.0465 4000000
60 60.00 -1.166054646931 -1.202662201513 0.036607554582 283.2087 0.0464 4000000
70 70.00 -1.166052143011 -1.204911990844 0.038859847833 300.6332 0.0460 4000000
80 80.00 -1.166048803912 -1.203635015020 0.037586211108 290.7799 0.0460 4000000
90 90.00 -1.166048006780 -1.203820491599 0.037772484818 292.2210 0.0459 4000000
100 100.00 -1.166049793504 -1.206862845060 0.040813051556 315.7439 0.0464 4000000
Fri Dec 15 16:11:47 2023: Ending simulation
Simulation Validation:
Initial energy : -1.166063303520
Final energy : -1.166049793504
eFinal/eInitial : 0.999988
Final atom count : 4000000, no atoms lost
Timings for Rank 0
Timer # Calls Avg/Call (s) Total (s) % Loop
___________________________________________________________________
total 1 18.9300 18.9300 103.58
loop 1 18.2756 18.2756 100.00
timestep 10 1.8274 18.2737 99.99
position 100 0.0016 0.1551 0.85
velocity 200 0.0014 0.2894 1.58
redistribute 101 0.0568 5.7384 31.40
atomHalo 101 0.0218 2.1972 12.02
force 101 0.1212 12.2418 66.98
commHalo 303 0.0016 0.4873 2.67
commReduce 39 0.0000 0.0000 0.00
Timing Statistics Across 1 Ranks:
Timer Rank: Min(s) Rank: Max(s) Avg(s) Stdev(s)
_____________________________________________________________________________
total 0: 18.9300 0: 18.9300 18.9300 0.0000
loop 0: 18.2756 0: 18.2756 18.2756 0.0000
timestep 0: 18.2737 0: 18.2737 18.2737 0.0000
position 0: 0.1551 0: 0.1551 0.1551 0.0000
velocity 0: 0.2894 0: 0.2894 0.2894 0.0000
redistribute 0: 5.7384 0: 5.7384 5.7384 0.0000
atomHalo 0: 2.1972 0: 2.1972 2.1972 0.0000
force 0: 12.2418 0: 12.2418 12.2418 0.0000
commHalo 0: 0.4873 0: 0.4873 0.4873 0.0000
commReduce 0: 0.0000 0: 0.0000 0.0000 0.0000
---------------------------------------------------
Average atom update rate: 0.05 us/atom/task
---------------------------------------------------
---------------------------------------------------
Average all atom update rate: 0.05 us/atom
---------------------------------------------------
---------------------------------------------------
Average atom rate: 21.89 atoms/us
---------------------------------------------------
Fri Dec 15 16:11:47 2023: CoMD Ending
* Info: Process finished (host ip-172-31-47-199, process 77944)[0m
Your experiment path is /home/hbollore/qaas-runs/170-265-5545/intel/CoMD/run/oneview_runs/compilers/gcc_4/oneview_results_1702656686/tools/lprof_npsu_run_0
To display your profiling results:
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# LEVEL | REPORT | COMMAND #
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# Functions | Cluster-wide | maqao lprof -df xp=/home/hbollore/qaas-runs/170-265-5545/intel/CoMD/run/oneview_runs/compilers/gcc_4/oneview_results_1702656686/tools/lprof_npsu_run_0 #
# Functions | Per-node | maqao lprof -df -dn xp=/home/hbollore/qaas-runs/170-265-5545/intel/CoMD/run/oneview_runs/compilers/gcc_4/oneview_results_1702656686/tools/lprof_npsu_run_0 #
# Functions | Per-process | maqao lprof -df -dp xp=/home/hbollore/qaas-runs/170-265-5545/intel/CoMD/run/oneview_runs/compilers/gcc_4/oneview_results_1702656686/tools/lprof_npsu_run_0 #
# Functions | Per-thread | maqao lprof -df -dt xp=/home/hbollore/qaas-runs/170-265-5545/intel/CoMD/run/oneview_runs/compilers/gcc_4/oneview_results_1702656686/tools/lprof_npsu_run_0 #
# Loops | Cluster-wide | maqao lprof -dl xp=/home/hbollore/qaas-runs/170-265-5545/intel/CoMD/run/oneview_runs/compilers/gcc_4/oneview_results_1702656686/tools/lprof_npsu_run_0 #
# Loops | Per-node | maqao lprof -dl -dn xp=/home/hbollore/qaas-runs/170-265-5545/intel/CoMD/run/oneview_runs/compilers/gcc_4/oneview_results_1702656686/tools/lprof_npsu_run_0 #
# Loops | Per-process | maqao lprof -dl -dp xp=/home/hbollore/qaas-runs/170-265-5545/intel/CoMD/run/oneview_runs/compilers/gcc_4/oneview_results_1702656686/tools/lprof_npsu_run_0 #
# Loops | Per-thread | maqao lprof -dl -dt xp=/home/hbollore/qaas-runs/170-265-5545/intel/CoMD/run/oneview_runs/compilers/gcc_4/oneview_results_1702656686/tools/lprof_npsu_run_0 #
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