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Executable Output


* Info: Detected 1 Lprof instances in ip-172-31-47-249.ec2.internal. 
If this is incorrect, rerun with number-processes-per-node=X
Tue Mar  4 11:45:50 2025: Starting Initialization


Mini-Application Name    : CoMD-openmp-mpi
Mini-Application Version : 1.1
Platform:
  hostname: ip-172-31-47-249.ec2.internal
  kernel name: 'Linux'
  kernel release: '6.1.109-118.189.amzn2023.aarch64'
  processor: 'aarch64'
Build:
  CC: '/home/hbollore/soft/openmpi-5.0.6-gnu-14.2.0/bin/mpicc'
  compiler version: 'gcc (GCC) 14.2.0'
  CFLAGS: '-O3 -mcpu=native -DDO_MPI -O3 -mcpu=neoverse-v2 -larmpl -funroll-loops -ffast-math -g -fno-omit-frame-pointer -fcf-protection=none -no-pie -grecord-gcc-switches -fopenmp -funroll-loops'
  LDFLAGS: ' '
  using MPI: true
  Threading: OpenMP (96 threads) 
  Double Precision: true
Run Date/Time: 2025-03-04, 11:45:50

Command Line Parameters:
  doeam: 0
  potDir: pots
  potName: Cu_u6.eam
  potType: funcfl
  nx: 100
  ny: 100
  nz: 100
  xproc: 1
  yproc: 1
  zproc: 1
  Lattice constant: -1 Angstroms
  nSteps: 100
  printRate: 10
  Time step: 1 fs
  Initial Temperature: 600 K
  Initial Delta: 0 Angstroms

Simulation data: 
  Total atoms        : 4000000
  Min global bounds  : [   0.0000000000,   0.0000000000,   0.0000000000 ]
  Max global bounds  : [ 361.5000000000, 361.5000000000, 361.5000000000 ]

Decomposition data: 
  Processors         :      1,     1,     1
  Local boxes        :     62,    62,    62 =   238328
  Box size           : [   5.8306451613,   5.8306451613,   5.8306451613 ]
  Box factor         : [   1.0074548875,   1.0074548875,   1.0074548875 ] 
  Max Link Cell Occupancy: 32 of 64

Potential data: 
  Potential type   : Lennard-Jones
  Species name     : Cu
  Atomic number    : 29
  Mass             : 63.55 amu
  Lattice Type     : FCC
  Lattice spacing  : 3.615 Angstroms
  Cutoff           : 5.7875 Angstroms
  Epsilon          : 0.167 eV
  Sigma            : 2.315 Angstroms


Initial energy : -1.166063303481, atom count : 4000000 

Tue Mar  4 11:45:51 2025: Initialization Finished

Tue Mar  4 11:45:51 2025: Starting simulation

#                                                                                         Performance
#  Loop   Time(fs)       Total Energy   Potential Energy     Kinetic Energy  Temperature   (us/atom)     # Atoms
      0       0.00    -1.166063303481    -1.243619295081     0.077555991600     600.0000     0.0000      4000000
     10      10.00    -1.166059650500    -1.233157709949     0.067098059449     519.0938     0.0245      4000000
     20      20.00    -1.166048438416    -1.208183014318     0.042134575902     325.9677     0.0270      4000000
     30      30.00    -1.166037590737    -1.186586197151     0.020548606414     158.9711     0.0266      4000000
     40      40.00    -1.166042093134    -1.183625399859     0.017583306724     136.0305     0.0266      4000000
     50      50.00    -1.166051684893    -1.193713710258     0.027662025365     214.0030     0.0267      4000000
     60      60.00    -1.166054646931    -1.202662201513     0.036607554582     283.2087     0.0268      4000000
     70      70.00    -1.166052143011    -1.204911990844     0.038859847833     300.6332     0.0267      4000000
     80      80.00    -1.166048803912    -1.203635015020     0.037586211108     290.7799     0.0268      4000000
     90      90.00    -1.166048006780    -1.203820491599     0.037772484818     292.2210     0.0266      4000000
    100     100.00    -1.166049793504    -1.206862845060     0.040813051556     315.7439     0.0266      4000000
Tue Mar  4 11:46:01 2025: Ending simulation



Simulation Validation:
  Initial energy  : -1.166063303481
  Final energy    : -1.166049793504
  eFinal/eInitial : 0.999988
  Final atom count : 4000000, no atoms lost


Timings for Rank 0
        Timer        # Calls    Avg/Call (s)   Total (s)    % Loop
___________________________________________________________________
total                      1      11.0613       11.0613      104.42
loop                       1      10.5932       10.5932      100.00
timestep                  10       1.0592       10.5920       99.99
  position               100       0.0010        0.1007        0.95
  velocity               200       0.0009        0.1880        1.77
  redistribute           101       0.0348        3.5167       33.20
    atomHalo             101       0.0173        1.7439       16.46
  force                  101       0.0680        6.8684       64.84
commHalo                 303       0.0013        0.4069        3.84
commReduce                39       0.0000        0.0001        0.00

Timing Statistics Across 1 Ranks:
        Timer        Rank: Min(s)       Rank: Max(s)      Avg(s)    Stdev(s)
_____________________________________________________________________________
total                0:   11.0613       0:   11.0613     11.0613      0.0000
loop                 0:   10.5932       0:   10.5932     10.5932      0.0000
timestep             0:   10.5920       0:   10.5920     10.5920      0.0000
  position           0:    0.1007       0:    0.1007      0.1007      0.0000
  velocity           0:    0.1880       0:    0.1880      0.1880      0.0000
  redistribute       0:    3.5167       0:    3.5167      3.5167      0.0000
    atomHalo         0:    1.7439       0:    1.7439      1.7439      0.0000
  force              0:    6.8684       0:    6.8684      6.8684      0.0000
commHalo             0:    0.4069       0:    0.4069      0.4069      0.0000
commReduce           0:    0.0001       0:    0.0001      0.0001      0.0000

---------------------------------------------------
 Average atom update rate:       0.03 us/atom/task
---------------------------------------------------


---------------------------------------------------
 Average all atom update rate:   0.03 us/atom
---------------------------------------------------


---------------------------------------------------
 Average atom rate:             37.76 atoms/us
---------------------------------------------------

Tue Mar  4 11:46:02 2025: CoMD Ending



Your experiment path is /home/hbollore/qaas/qaas-runs/174-108-7908/intel/CoMD/run/oneview_runs/compilers/gcc_1/oneview_results_1741088748/tools/lprof_npsu_run_0

To display your profiling results:
####################################################################################################################################################################################################
#    LEVEL    |     REPORT     |                                                                              COMMAND                                                                              #
####################################################################################################################################################################################################
#  Functions  |  Cluster-wide  |  maqao lprof -df xp=/home/hbollore/qaas/qaas-runs/174-108-7908/intel/CoMD/run/oneview_runs/compilers/gcc_1/oneview_results_1741088748/tools/lprof_npsu_run_0      #
#  Functions  |  Per-node      |  maqao lprof -df -dn xp=/home/hbollore/qaas/qaas-runs/174-108-7908/intel/CoMD/run/oneview_runs/compilers/gcc_1/oneview_results_1741088748/tools/lprof_npsu_run_0  #
#  Functions  |  Per-process   |  maqao lprof -df -dp xp=/home/hbollore/qaas/qaas-runs/174-108-7908/intel/CoMD/run/oneview_runs/compilers/gcc_1/oneview_results_1741088748/tools/lprof_npsu_run_0  #
#  Functions  |  Per-thread    |  maqao lprof -df -dt xp=/home/hbollore/qaas/qaas-runs/174-108-7908/intel/CoMD/run/oneview_runs/compilers/gcc_1/oneview_results_1741088748/tools/lprof_npsu_run_0  #
#  Loops      |  Cluster-wide  |  maqao lprof -dl xp=/home/hbollore/qaas/qaas-runs/174-108-7908/intel/CoMD/run/oneview_runs/compilers/gcc_1/oneview_results_1741088748/tools/lprof_npsu_run_0      #
#  Loops      |  Per-node      |  maqao lprof -dl -dn xp=/home/hbollore/qaas/qaas-runs/174-108-7908/intel/CoMD/run/oneview_runs/compilers/gcc_1/oneview_results_1741088748/tools/lprof_npsu_run_0  #
#  Loops      |  Per-process   |  maqao lprof -dl -dp xp=/home/hbollore/qaas/qaas-runs/174-108-7908/intel/CoMD/run/oneview_runs/compilers/gcc_1/oneview_results_1741088748/tools/lprof_npsu_run_0  #
#  Loops      |  Per-thread    |  maqao lprof -dl -dt xp=/home/hbollore/qaas/qaas-runs/174-108-7908/intel/CoMD/run/oneview_runs/compilers/gcc_1/oneview_results_1741088748/tools/lprof_npsu_run_0  #
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